View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16744_low_2 (Length: 546)

Name: NF16744_low_2
Description: NF16744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16744_low_2
NF16744_low_2
[»] chr7 (14 HSPs)
chr7 (1-262)||(47423191-47423452)
chr7 (254-465)||(47424716-47424927)
chr7 (254-325)||(47424449-47424520)
chr7 (418-466)||(27778190-27778238)
chr7 (418-466)||(28597008-28597056)
chr7 (418-466)||(40842535-40842583)
chr7 (416-466)||(7390667-7390717)
chr7 (418-466)||(19426708-19426756)
chr7 (418-466)||(22330526-22330574)
chr7 (418-466)||(37351885-37351932)
chr7 (418-466)||(40717133-40717181)
chr7 (418-465)||(7807184-7807231)
chr7 (418-457)||(32154445-32154484)
chr7 (420-466)||(43260119-43260165)
[»] chr5 (8 HSPs)
chr5 (412-466)||(13613852-13613906)
chr5 (418-466)||(21749487-21749535)
chr5 (418-466)||(12661841-12661889)
chr5 (418-466)||(16202849-16202897)
chr5 (418-460)||(6515334-6515376)
chr5 (409-466)||(3141624-3141681)
chr5 (418-466)||(10232628-10232676)
chr5 (418-466)||(33243636-33243683)
[»] chr4 (11 HSPs)
chr4 (411-466)||(41952957-41953012)
chr4 (418-466)||(31240777-31240825)
chr4 (418-465)||(36792462-36792509)
chr4 (418-466)||(51039012-51039060)
chr4 (418-466)||(51318829-51318877)
chr4 (418-465)||(6953282-6953329)
chr4 (418-457)||(22257091-22257130)
chr4 (418-457)||(41951673-41951712)
chr4 (418-466)||(1580177-1580225)
chr4 (418-466)||(31275275-31275322)
chr4 (418-466)||(48099938-48099986)
[»] chr3 (11 HSPs)
chr3 (416-466)||(41309128-41309178)
chr3 (418-466)||(36318175-36318223)
chr3 (418-466)||(46003835-46003883)
chr3 (418-466)||(51650485-51650533)
chr3 (418-466)||(6126583-6126631)
chr3 (418-466)||(31249216-31249264)
chr3 (418-457)||(43169649-43169688)
chr3 (418-457)||(51406265-51406304)
chr3 (418-466)||(108558-108606)
chr3 (418-466)||(5399044-5399092)
chr3 (418-466)||(51464161-51464209)
[»] chr2 (5 HSPs)
chr2 (416-466)||(45515492-45515542)
chr2 (418-466)||(14140234-14140281)
chr2 (418-466)||(19913913-19913961)
chr2 (418-454)||(26321592-26321628)
chr2 (418-466)||(34138931-34138979)
[»] chr8 (14 HSPs)
chr8 (421-465)||(28570306-28570350)
chr8 (421-465)||(28577899-28577943)
chr8 (418-466)||(32175084-32175132)
chr8 (418-466)||(34474079-34474127)
chr8 (418-466)||(42543375-42543423)
chr8 (418-466)||(42768016-42768064)
chr8 (418-466)||(45101524-45101572)
chr8 (467-509)||(37123810-37123852)
chr8 (418-459)||(20473914-20473955)
chr8 (416-457)||(38576547-38576588)
chr8 (409-465)||(3650243-3650299)
chr8 (418-466)||(30925549-30925597)
chr8 (418-466)||(37101580-37101628)
chr8 (418-466)||(41406751-41406799)
[»] chr1 (7 HSPs)
chr1 (418-466)||(7503594-7503642)
chr1 (418-466)||(15061974-15062022)
chr1 (418-466)||(4638053-4638101)
chr1 (418-457)||(48872846-48872885)
chr1 (418-465)||(49425865-49425912)
chr1 (424-466)||(25859715-25859757)
chr1 (418-454)||(45272052-45272088)
[»] scaffold0204 (1 HSPs)
scaffold0204 (418-466)||(27468-27516)
[»] chr6 (1 HSPs)
chr6 (418-463)||(9954680-9954725)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 47423191 - 47423452
Alignment:
Q  1 ataattagttcaaccatatannnnnnncgtttcttttaattgttttgcttggtgattagcatccttgttttgttagaagaaaatcacggttcaaattata 100  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47423191 ataattagttcaaccatatatttttttcgtttcttttaattgttttgcttggtgattagcatccttgttttgttagaagaaaatcacggttcaaattata 47423290  T
Q  101 acttgttagcatactgcagtccaccccagtgactgcggagaaatacatctatttatatatgttgggagcttccacggtgcatttagtggtggtgaataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  47423291 acttgttagcatactgcagtccaccccagtgactgcggagaaatacatctatttatatatgttgggagcttctacggtgcatttagtagtggtgaataat 47423390  T
Q  201 gactattccgtgaaaattgaattatgtttcgtaggtgaagttgagggtgttgggttaatgag 262  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  47423391 gactattccgtgaaaatttaattatgttttgtaggtgaagttgagggtgttgggttaatgag 47423452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 254 - 465
Target Start/End: Original strand, 47424716 - 47424927
Alignment:
Q  254 gttaatgaggggatgaacnnnnnnnggatgaataacttaaggaacttaaacttgggatggagggtcccatattgaattttgctttttgtgtagcagactc 353  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  47424716 gttaatgaggggatgaactttttttggatgaataacttaaggaacttaaacttgggagggagggtcccatattgaattttgctttttgtgtaggagactc 47424815  T
Q  354 gttgtgctgtgttctctcgcgcttcactgagcagtgccattcatatctcattgagattgaatattgatatttgaacaaacatttcatataacttttggtg 453  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  47424816 gttgtgctgtgttctctcgtgcttcactgagcagtgccattcatatttcattgagattgaatagtgatatttgaacaaccatttcatacaacttttggtg 47424915  T
Q  454 acaatttctttt 465  Q
    ||||||| ||||    
T  47424916 acaatttttttt 47424927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 47424449 - 47424520
Alignment:
Q  254 gttaatgaggggatgaacnnnnnnnggatgaataacttaaggaacttaaacttgggatggagggtcccatat 325  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||    
T  47424449 gttaatgaggggatgaactttttttggatgaataacttaaggaacttaaacttgggagggagggtcccatat 47424520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 27778238 - 27778190
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||    
T  27778238 tgatatttgaacaaccatttcatataacttttggtgacaattttttttt 27778190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 28597056 - 28597008
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  28597056 tgatatttgaacaaccatttcatacaacttttggtgacaaattcttttt 28597008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 40842583 - 40842535
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  40842583 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 40842535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 7390667 - 7390717
Alignment:
Q  416 attgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||||| ||||||||| || |||||||||||| ||||||||    
T  7390667 attgatatttgaacaaccatttcatacaatttttggtgacaacttcttttt 7390717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 19426756 - 19426708
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| || |||||    
T  19426756 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttt 19426708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 22330526 - 22330574
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| |||||||||||| |||||||||||| || |||||    
T  22330526 tgatatttgaacaaccatttcatataatttttggtgacaactttttttt 22330574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 37351885 - 37351932
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  37351885 tgatatttgaacaatcatttgatataactttt-gtgacaatttcttttt 37351932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 40717133 - 40717181
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||| ||||||| ||||||||    
T  40717133 tgatatttgaacaaccatttcatacaactttttgtgacaacttcttttt 40717181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 465
Target Start/End: Complemental strand, 7807231 - 7807184
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    |||||||||||||| ||||||||| |||||||| |||||| |||||||    
T  7807231 tgatatttgaacaaccatttcatacaacttttgatgacaacttctttt 7807184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 32154445 - 32154484
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  32154445 tgatatttgaacaaccatttcatacaacttttggtgacaa 32154484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 43260165 - 43260119
Alignment:
Q  420 atatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||| ||||||||| |||||||| |||||| ||||||||    
T  43260165 atatttgaacaaccatttcatacaacttttgatgacaacttcttttt 43260119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 466
Target Start/End: Original strand, 13613852 - 13613906
Alignment:
Q  412 gaatattgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  13613852 gaatagtgatatttgaacaatcatttcatacaacttttggtgacaatttcttttt 13613906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 21749535 - 21749487
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  21749535 tgatatttgaacaaccattttatataatttttggtgacaatttcttttt 21749487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 12661841 - 12661889
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||||||||||||  |||||||| ||||||||||||||| ||||||||    
T  12661841 tgatatttgaacaactatttcatacaacttttggtgacaacttcttttt 12661889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 16202897 - 16202849
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||| ||||||| ||||||||    
T  16202897 tgatatttgaacaatcatttcatacaacttttagtgacaacttcttttt 16202849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 460
Target Start/End: Original strand, 6515334 - 6515376
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaattt 460  Q
    |||||||||||||| ||||||||| |||| |||||||||||||    
T  6515334 tgatatttgaacaaccatttcatacaactgttggtgacaattt 6515376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 3141681 - 3141624
Alignment:
Q  409 attgaatattgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||| || |||||||||||||| ||||||||| |||||||| |||||| || |||||    
T  3141681 attgagtagtgatatttgaacaaccatttcatacaacttttgatgacaactttttttt 3141624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 10232676 - 10232628
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||||||||||||  |||| ||| ||||||||||||||| ||||||||    
T  10232676 tgatatttgaacaactattttatacaacttttggtgacaacttcttttt 10232628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 33243636 - 33243683
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||| ||||||||| |||||||||| |||||    
T  33243636 tgatatttgaacaaccatttcagataactttt-gtgacaatttattttt 33243683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 466
Target Start/End: Complemental strand, 41953012 - 41952957
Alignment:
Q  411 tgaatattgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||| || |||||    
T  41953012 tgaatagtgatatttgaacaaccatttcatataacttttggtgacaactttttttt 41952957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 31240825 - 31240777
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  31240825 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 31240777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 465
Target Start/End: Complemental strand, 36792509 - 36792462
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  36792509 tgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 36792462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 51039012 - 51039060
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||| ||||| ||||||||| |||||||||||||||||| |||||    
T  51039012 tgatatttaaacaaccatttcatacaacttttggtgacaattttttttt 51039060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 51318877 - 51318829
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||| ||||| |||||||||||| ||||||||||||||| |||||    
T  51318877 tgatatttaaacaaccatttcatataatttttggtgacaattttttttt 51318829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 465
Target Start/End: Original strand, 6953282 - 6953329
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    |||||||||||||| |||||| || ||||||||||||||| |||||||    
T  6953282 tgatatttgaacaaccatttcttacaacttttggtgacaacttctttt 6953329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 22257091 - 22257130
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  22257091 tgatatttgaacaaccatttcatacaacttttggtgacaa 22257130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Complemental strand, 41951712 - 41951673
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  41951712 tgatatttgaacaaccatttcatataatttttggtgacaa 41951673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 1580177 - 1580225
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||| ||||||| || |||||    
T  1580177 tgatatttgaacaaccatttcatacaactttttgtgacaactttttttt 1580225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 31275322 - 31275275
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||| ||| ||||||| ||||||||||||||||    
T  31275322 tgatatttgaacaaccatttgatacaactttt-gtgacaatttcttttt 31275275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 48099986 - 48099938
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||| ||||| ||||||||| ||||||||||||||| || |||||    
T  48099986 tgatatttaaacaaccatttcatacaacttttggtgacaactttttttt 48099938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 41309178 - 41309128
Alignment:
Q  416 attgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  41309178 attgatatttgaacaatcatttcatacaacttttggtgacaacttcttttt 41309128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 36318175 - 36318223
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  36318175 tgatatttgaacaaccatttcatataatttttggtgacaacttcttttt 36318223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 46003883 - 46003835
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  46003883 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 46003835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 51650533 - 51650485
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  51650533 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 51650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 6126631 - 6126583
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| |||||||||| |||| ||||||||    
T  6126631 tgatatttgaacaaccatttcatacaacttttggttacaacttcttttt 6126583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 31249216 - 31249264
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| || |||||    
T  31249216 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttt 31249264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 43169649 - 43169688
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  43169649 tgatatttgaacaaccatttcatacaacttttggtgacaa 43169688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 51406265 - 51406304
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  51406265 tgatatttgaacaactatttcatataacttttggtgacaa 51406304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 108606 - 108558
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||||||||||||  |||||||| ||||||||||||||| || |||||    
T  108606 tgatatttgaacaactatttcatacaacttttggtgacaactttttttt 108558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 5399092 - 5399044
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||  ||||||||||||||| || |||||    
T  5399092 tgatatttgaacaaccatttcatccaacttttggtgacaactttttttt 5399044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 51464161 - 51464209
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||| ||| ||||||||||||||| || |||||    
T  51464161 tgatatttgaacaaccattttatacaacttttggtgacaactttttttt 51464209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 45515492 - 45515542
Alignment:
Q  416 attgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  45515492 attgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 45515542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 14140234 - 14140281
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||| | ||||||||| ||||||||||||||||    
T  14140234 tgatatttgaacaatcatttaaaataactttt-gtgacaatttcttttt 14140281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 19913961 - 19913913
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| |||||| |||||||| || |||||    
T  19913961 tgatatttgaacaaccatttcatacaactttcggtgacaactttttttt 19913913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 26321592 - 26321628
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtga 454  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  26321592 tgatatttgaacaatcatttcatacaacttttggtga 26321628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 34138931 - 34138979
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||| ||||| || |||||    
T  34138931 tgatatttgaacaaccatttcatacaacttttggcgacaactttttttt 34138979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 28570306 - 28570350
Alignment:
Q  421 tatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  28570306 tatttgaacaaccatttcatacaacttttggtgacaatttctttt 28570350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 28577899 - 28577943
Alignment:
Q  421 tatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  28577899 tatttgaacaaccatttcatacaacttttggtgacaatttctttt 28577943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 32175132 - 32175084
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  32175132 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 32175084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 34474127 - 34474079
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  34474127 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttt 34474079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 42543375 - 42543423
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||| |||||||| ||||||||| ||||||||||||||| ||||||||    
T  42543375 tgataattgaacaaccatttcatacaacttttggtgacaacttcttttt 42543423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 42768016 - 42768064
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||||||||||||| || |||| |||||||||| |||||    
T  42768016 tgatatttgaacaaacatttcatacaatttttagtgacaattttttttt 42768064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 45101572 - 45101524
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| ||||||||||||||| || |||||    
T  45101572 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttt 45101524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 37123852 - 37123810
Alignment:
Q  467 gagtgatgctatttggcacgacactctcttccacacgaatttg 509  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  37123852 gagtggtgctatttgatacgacactctcttccacacgaatttg 37123810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 20473955 - 20473914
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatt 459  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  20473955 tgatatttgaacaactatttcatataacttttagtgacaatt 20473914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 38576588 - 38576547
Alignment:
Q  416 attgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    |||||||||||||||| ||||||| | |||||||||||||||    
T  38576588 attgatatttgaacaaccatttcaaacaacttttggtgacaa 38576547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 3650299 - 3650243
Alignment:
Q  409 attgaatattgatatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    ||||| || |||||||| ||||| ||||| | |||||||||||||||||||| ||||    
T  3650299 attgagtagtgatattttaacaaccatttgagataacttttggtgacaatttatttt 3650243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 30925549 - 30925597
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||| ||| ||||||||||||||| || |||||    
T  30925549 tgatatttgaacaaccattttatacaacttttggtgacaactttttttt 30925597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 37101580 - 37101628
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| || |||| ||||||| ||||||||    
T  37101580 tgatatttgaacaaccatttcatacaatttttcgtgacaacttcttttt 37101628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 41406751 - 41406799
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    ||||||||||| || ||||| |||||||||||||||| ||||| |||||    
T  41406751 tgatatttgaataaccattttatataacttttggtgataattttttttt 41406799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 7503642 - 7503594
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  7503642 tgatatttgaacaaccatttcatacaacttttggtgacaattttttttt 7503594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 15062022 - 15061974
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||||||||||||||||||| || |||||    
T  15062022 tgatatttgaacaaccatttcatataacttttggtgacaactttttttt 15061974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 4638101 - 4638053
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| |||||||||||||| ||| |||||    
T  4638101 tgatatttgaacaaccatttcatacaacttttggtgacatttttttttt 4638053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 48872846 - 48872885
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaa 457  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  48872846 tgatatttgaacaaccatttcatacaacttttggtgacaa 48872885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 465
Target Start/End: Complemental strand, 49425912 - 49425865
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttctttt 465  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| ||||    
T  49425912 tgatatttgaacaaccatttcatacaacttttggtgataatttttttt 49425865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 25859757 - 25859715
Alignment:
Q  424 ttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||| |||||||||||||||||| | |||||||||||||    
T  25859757 ttgaacaaccatttcatataacttttgataacaatttcttttt 25859715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 45272052 - 45272088
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtga 454  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  45272052 tgatatttgaacaaccatttcatacaacttttggtga 45272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 27516 - 27468
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttcttttt 466  Q
    |||||||||||||| ||||||||| || |||| ||||||||||||||||    
T  27516 tgatatttgaacaaccatttcatacaatttttagtgacaatttcttttt 27468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 9954725 - 9954680
Alignment:
Q  418 tgatatttgaacaaacatttcatataacttttggtgacaatttctt 463  Q
    |||||||||||||| ||||| ||| ||||||||||||||| |||||    
T  9954725 tgatatttgaacaaccatttaatacaacttttggtgacaacttctt 9954680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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