View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16744_low_4 (Length: 380)

Name: NF16744_low_4
Description: NF16744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16744_low_4
NF16744_low_4
[»] chr7 (20 HSPs)
chr7 (31-380)||(34706045-34706394)
chr7 (204-327)||(11509578-11509702)
chr7 (232-327)||(32944656-32944752)
chr7 (227-371)||(11509556-11509701)
chr7 (232-311)||(18148595-18148675)
chr7 (205-294)||(22529985-22530075)
chr7 (273-380)||(18148564-18148668)
chr7 (253-338)||(22529988-22530073)
chr7 (276-328)||(34706021-34706073)
chr7 (216-264)||(32944675-32944723)
chr7 (275-338)||(32944691-32944753)
chr7 (297-371)||(22529988-22530061)
chr7 (310-379)||(18148525-18148594)
chr7 (204-264)||(18148612-18148672)
chr7 (276-360)||(22529951-22530035)
chr7 (219-308)||(3386515-3386606)
chr7 (310-380)||(11509609-11509679)
chr7 (207-260)||(18148542-18148595)
chr7 (322-371)||(32944703-32944752)
chr7 (352-380)||(32944679-32944707)
[»] chr1 (23 HSPs)
chr1 (205-376)||(23633027-23633199)
chr1 (217-357)||(9132275-9132415)
chr1 (193-327)||(90209-90344)
chr1 (204-327)||(41137830-41137954)
chr1 (204-335)||(9132307-9132438)
chr1 (232-327)||(12785245-12785342)
chr1 (204-327)||(9132352-9132474)
chr1 (204-294)||(52272931-52273022)
chr1 (250-371)||(9132263-9132384)
chr1 (242-371)||(52272900-52273029)
chr1 (297-379)||(52272967-52273049)
chr1 (220-338)||(41137801-41137919)
chr1 (313-371)||(23633166-23633224)
chr1 (273-380)||(12785268-12785373)
chr1 (216-264)||(12785264-12785312)
chr1 (312-379)||(90278-90345)
chr1 (310-379)||(9132338-9132407)
chr1 (276-380)||(90232-90335)
chr1 (182-294)||(23633110-23633223)
chr1 (290-371)||(90271-90351)
chr1 (310-379)||(9132293-9132362)
chr1 (310-379)||(12785343-12785412)
chr1 (314-371)||(41137850-41137907)
[»] chr8 (18 HSPs)
chr8 (237-371)||(9882495-9882631)
chr8 (205-338)||(12577091-12577224)
chr8 (216-327)||(9882494-9882607)
chr8 (204-292)||(40387764-40387854)
chr8 (242-371)||(12577103-12577232)
chr8 (238-338)||(40387764-40387865)
chr8 (232-294)||(42145629-42145692)
chr8 (282-357)||(40387791-40387865)
chr8 (216-327)||(17289831-17289939)
chr8 (342-379)||(9882518-9882555)
chr8 (276-320)||(1216943-1216987)
chr8 (276-371)||(42145598-42145692)
chr8 (295-379)||(9882564-9882648)
chr8 (204-275)||(12577079-12577150)
chr8 (286-357)||(17289888-17289958)
chr8 (242-303)||(17289896-17289958)
chr8 (350-379)||(1216960-1216989)
chr8 (232-327)||(12577072-12577167)
[»] chr5 (11 HSPs)
chr5 (204-371)||(29496761-29496928)
chr5 (218-371)||(29496820-29496973)
chr5 (227-371)||(29496739-29496883)
chr5 (193-275)||(39436934-39437016)
chr5 (232-371)||(29496698-29496838)
chr5 (242-294)||(23959861-23959914)
chr5 (217-294)||(19076602-19076678)
chr5 (204-251)||(29496896-29496943)
chr5 (246-327)||(39436942-39437023)
chr5 (314-371)||(39436965-39437022)
chr5 (246-289)||(14048126-14048170)
[»] chr4 (30 HSPs)
chr4 (204-327)||(23973091-23973215)
chr4 (204-327)||(15703713-15703836)
chr4 (232-327)||(11150571-11150667)
chr4 (193-380)||(15703736-15703922)
chr4 (232-357)||(42597244-42597369)
chr4 (204-293)||(19612744-19612835)
chr4 (237-371)||(25127107-25127243)
chr4 (242-371)||(19612737-19612867)
chr4 (216-294)||(42597273-42597352)
chr4 (273-380)||(11150594-11150698)
chr4 (274-377)||(42597242-42597344)
chr4 (204-264)||(11150590-11150650)
chr4 (232-327)||(18875321-18875417)
chr4 (253-327)||(9564917-9564992)
chr4 (207-308)||(25127122-25127225)
chr4 (232-294)||(37838560-37838623)
chr4 (204-271)||(37838577-37838644)
chr4 (204-271)||(42597306-42597373)
chr4 (257-379)||(23973115-23973235)
chr4 (207-264)||(9564916-9564973)
chr4 (204-257)||(18875347-18875400)
chr4 (314-378)||(19612734-19612798)
chr4 (204-271)||(15242113-15242180)
chr4 (217-267)||(25127177-25127228)
chr4 (314-371)||(23973092-23973150)
chr4 (246-275)||(13885308-13885337)
chr4 (242-294)||(15242106-15242159)
chr4 (82-135)||(25126935-25126988)
chr4 (276-357)||(37838560-37838640)
chr4 (283-327)||(14644869-14644913)
[»] chr2 (22 HSPs)
chr2 (222-327)||(20264537-20264641)
chr2 (216-338)||(16092564-16092687)
chr2 (232-357)||(37379666-37379791)
chr2 (232-371)||(20264502-20264640)
chr2 (216-294)||(37379683-37379762)
chr2 (247-371)||(16092576-16092701)
chr2 (274-377)||(37379691-37379793)
chr2 (242-327)||(38991836-38991922)
chr2 (234-294)||(27401575-27401636)
chr2 (276-375)||(20264502-20264600)
chr2 (204-267)||(27401590-27401653)
chr2 (204-271)||(37379662-37379729)
chr2 (204-294)||(16092562-16092654)
chr2 (314-380)||(38991859-38991925)
chr2 (310-379)||(20264505-20264574)
chr2 (317-377)||(16092601-16092661)
chr2 (310-371)||(20179919-20179979)
chr2 (278-357)||(27401575-27401653)
chr2 (218-294)||(38991899-38991970)
chr2 (227-294)||(27401583-27401651)
chr2 (204-264)||(38991855-38991915)
chr2 (219-251)||(38991898-38991930)
[»] scaffold0281 (5 HSPs)
scaffold0281 (204-371)||(826-993)
scaffold0281 (204-328)||(824-948)
scaffold0281 (217-371)||(871-1025)
scaffold0281 (246-371)||(916-1041)
scaffold0281 (273-378)||(894-998)
[»] chr3 (34 HSPs)
chr3 (232-327)||(3472720-3472816)
chr3 (204-303)||(52466242-52466342)
chr3 (246-327)||(3586214-3586296)
chr3 (232-338)||(52466225-52466331)
chr3 (244-379)||(18539017-18539152)
chr3 (232-327)||(39728066-39728163)
chr3 (211-295)||(15778144-15778230)
chr3 (247-323)||(18694494-18694571)
chr3 (247-323)||(18710013-18710090)
chr3 (308-379)||(3475963-3476034)
chr3 (208-294)||(18539026-18539113)
chr3 (273-371)||(52466222-52466319)
chr3 (191-264)||(3586233-3586306)
chr3 (229-327)||(3262905-3263004)
chr3 (242-319)||(18539090-18539168)
chr3 (208-264)||(3472741-3472797)
chr3 (232-338)||(15778120-15778227)
chr3 (290-380)||(3472704-3472793)
chr3 (273-380)||(39728035-39728140)
chr3 (242-371)||(3475889-3476025)
chr3 (204-260)||(3475962-3476018)
chr3 (216-264)||(39728096-39728144)
chr3 (273-379)||(52466237-52466342)
chr3 (210-266)||(3475904-3475960)
chr3 (204-264)||(18539097-18539157)
chr3 (344-379)||(3586238-3586273)
chr3 (216-251)||(18706231-18706266)
chr3 (209-259)||(3262930-3262980)
chr3 (318-371)||(15778161-15778214)
chr3 (222-267)||(18539085-18539130)
chr3 (310-379)||(39727996-39728065)
chr3 (344-380)||(3262945-3262981)
chr3 (344-380)||(18694516-18694552)
chr3 (344-380)||(18710035-18710071)
[»] chr6 (15 HSPs)
chr6 (216-294)||(9547899-9547978)
chr6 (207-288)||(27572930-27573013)
chr6 (222-275)||(19891961-19892014)
chr6 (201-267)||(9547882-9547948)
chr6 (261-338)||(9547901-9547978)
chr6 (322-380)||(19770015-19770073)
chr6 (204-264)||(19567678-19567738)
chr6 (232-275)||(19770015-19770058)
chr6 (297-371)||(27572931-27573005)
chr6 (219-308)||(3851907-3851997)
chr6 (314-371)||(19891955-19892012)
chr6 (245-323)||(19567674-19567753)
chr6 (314-371)||(9547913-9547970)
chr6 (247-358)||(3851890-3852001)
chr6 (341-377)||(19891733-19891769)
[»] scaffold0323 (4 HSPs)
scaffold0323 (246-327)||(15506-15588)
scaffold0323 (193-264)||(15525-15596)
scaffold0323 (297-371)||(15507-15581)
scaffold0323 (344-380)||(15529-15565)
[»] scaffold0024 (4 HSPs)
scaffold0024 (315-380)||(109053-109118)
scaffold0024 (204-275)||(109068-109139)
scaffold0024 (315-362)||(106961-107008)
scaffold0024 (204-270)||(106963-107029)
[»] scaffold0498 (3 HSPs)
scaffold0498 (224-275)||(10001-10052)
scaffold0498 (305-376)||(9990-10061)
scaffold0498 (204-294)||(9954-10042)
[»] scaffold0139 (2 HSPs)
scaffold0139 (246-289)||(22674-22718)
scaffold0139 (204-245)||(22674-22715)
[»] scaffold0449 (1 HSPs)
scaffold0449 (310-371)||(223-284)
[»] scaffold0005 (1 HSPs)
scaffold0005 (283-327)||(172379-172423)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 31 - 380
Target Start/End: Complemental strand, 34706394 - 34706045
Alignment:
Q  31 tacaatagatgtatgtttgattgattgaagattcagtactaatttagtttgaaataatatattatatttttaaagtgaatttttgaagataattgttata 130  Q
    ||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34706394 tacaatatatgtatgtttgatcgatcgaagattcaatactaatttagtttgaaataatatattatatttttaaagtgaatttttgaagataattgttata 34706295  T
Q  131 gtgaattgaattaatgagatattaaatgatgttannnnnnnnnnnnnnnnaaaagatgtgaatatttgatgacgtgttatttaaggatgtgtgatttaaa 230  Q
    |||||||||||| |||||||||||||||||||||                |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34706294 gtgaattgaattgatgagatattaaatgatgttatttttattttatttttaaaagatgtgaatatttgatgacgtgttatttaaagatgtgtgatttaaa 34706195  T
Q  231 tatgtgttatataaagatgtgctatttgaagatgtgtgatttaaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttat 330  Q
     | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  34706194 gacgtgttatataaagatgtgctagttgaagatgtgtgatttaaaatgtgttatataaagatgtaatattcgatgatgatgctatttaaaaatgtgttat 34706095  T
Q  331 ataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34706094 ataaagatttgctatttgaagatgtgttatataaagatgtgatatttgac 34706045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 11509578 - 11509702
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  11509578 gtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtgctatttgaagatgtgtgatttaaagatgttttatataaagatgtgatatttg 11509677  T
Q  303 atgatgatgttatttaaagatgtgt 327  Q
    | ||||||| |||||||||||||||    
T  11509678 acgatgatgctatttaaagatgtgt 11509702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 32944752 - 32944656
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaaa-tgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  32944752 atgtgttatataaagatatactatttgaagatgtgtgatttaaaaatgtgttatataaagatgtgatatttgacgatgatgctatttaaaaatgtgt 32944656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 371
Target Start/End: Original strand, 11509556 - 11509701
Alignment:
Q  227 taaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgt 325  Q
    |||| ||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||| ||| ||||||||||||    
T  11509556 taaagatgtgttctataaggatgtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtgctatttgaagatg-tgtgatttaaagatgt 11509654  T
Q  326 gttatataaagattttctatttgaagatg-tgttatataaagatgtg 371  Q
     |||||||||||| |  ||||||| |||| || ||| ||||||||||    
T  11509655 tttatataaagatgtgatatttgacgatgatgctatttaaagatgtg 11509701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 18148595 - 18148675
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaa-aatgtgttatataaagatgtaatatttgatgatgatg 311  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||| |||||||| |||||||    
T  18148595 atgtgttatataaagatgtgttatttgaagatgtgtgatttaacgatgtgtcatataaagatgtgatatttgacgatgatg 18148675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 22529985 - 22530075
Alignment:
Q  205 tgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||| | ||||||| ||||||| ||||| |||||||||||||  |||||||| ||||||||| |||| |||||||||||||||||||    
T  22529985 tgttatttgaagatgtgtaatttaaagatgtgctatataaagatgtattatttgaatatgtgtgatataaagatgtgttatataaagatgt 22530075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 18148564 - 18148668
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtga 372  Q
    |||||||||||||||||||||| ||||||||  ||| |||||| |||||||||||||| | ||||| |   |||| | ||||||| ||||||||||||||    
T  18148564 aaaatgtgttatataaagatgtgatatttga--atg-tgttatataaagatgtgttatttgaagatgtgtgatttaacgatgtgtcatataaagatgtga 18148660  T
Q  373 tatttgac 380  Q
    ||||||||    
T  18148661 tatttgac 18148668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 22529988 - 22530073
Alignment:
Q  253 tatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagat 338  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| |||||||  ||| ||| || ||||||||||||||||||||||    
T  22529988 tatttgaagatgtgtaatttaaagatgtgctatataaagatgtattatttgaatatg-tgtgatataaagatgtgttatataaagat 22530073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 34706073 - 34706021
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgtt 328  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  34706073 atgtgttatataaagatgtgatatttgacgatgatgctatttaaagatgtgtt 34706021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 32944723 - 32944675
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  32944723 gatgtgtgatttaaaaatgtgttatataaagatgtgatatttgacgatg 32944675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 32944753 - 32944691
Alignment:
Q  275 aatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagat 338  Q
    |||||||||||||||||| || ||||||| |||| ||| ||||||| |||||||||||||||||    
T  32944753 aatgtgttatataaagatatactatttgaagatg-tgtgatttaaaaatgtgttatataaagat 32944691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 22529988 - 22530061
Alignment:
Q  297 tatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||| |||| ||| ||||||||||||| ||||||||||| |  |||||||| |||||| |||||||||||||    
T  22529988 tatttgaagatg-tgtaatttaaagatgtgctatataaagatgtattatttgaatatgtgtgatataaagatgtg 22530061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 18148525 - 18148594
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||||| | ||| | |||||||||||| ||  |||| || ||||||||||||||||||||||||||||    
T  18148525 tgttatttgacgatatattatataaagatgtttcatttaaaaatgtgttatataaagatgtgatatttga 18148594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 18148612 - 18148672
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||| | ||||||||||||||  |||||| ||||||||||||| ||||||| ||||    
T  18148612 gtgttatttgaagatgtgtgatttaacgatgtgtcatataaagatgtgatatttgacgatg 18148672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 22529951 - 22530035
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttat 360  Q
    ||||||||| ||| |||||  ||||||| ||||||||||||| ||||||||| || ||||||| | |||| | ||||||| ||||    
T  22529951 atgtgttatttaacgatgttgtatttgacgatgatgttatttgaagatgtgtaatttaaagatgtgctatataaagatgtattat 22530035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 3386606 - 3386515
Alignment:
Q  219 gtgtgatttaaatatgtgtt-atataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatg 308  Q
    ||||| |||||| || |||| ||||| ||||||||||| | ||||||||| || |||| ||||||||| |||||||||  ||||||||||||    
T  3386606 gtgtgctttaaagatttgttgatatagagatgtgctatataaagatgtgtcatataaagatgtgttatctaaagatgtgttatttgatgatg 3386515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 11509609 - 11509679
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||||| |||||||||| ||| | ||||| |   |||| ||||||| ||||||||||||||||||||||||    
T  11509609 tgttatataaagatgtgctatttgaagatgtgtgatttaaagatgttttatataaagatgtgatatttgac 11509679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 18148542 - 18148595
Alignment:
Q  207 ttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaa 260  Q
    |||| ||| ||||| | ||||||| |||||||||||||||||||| ||||||||    
T  18148542 ttatataaagatgtttcatttaaaaatgtgttatataaagatgtgatatttgaa 18148595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 32944752 - 32944703
Alignment:
Q  322 atgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||||||| | |||||||||||||||| || |||| |||||    
T  32944752 atgtgttatataaagatatactatttgaagatgtgtgatttaaaaatgtg 32944703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 380
Target Start/End: Complemental strand, 32944707 - 32944679
Alignment:
Q  352 atgtgttatataaagatgtgatatttgac 380  Q
    |||||||||||||||||||||||||||||    
T  32944707 atgtgttatataaagatgtgatatttgac 32944679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 205 - 376
Target Start/End: Original strand, 23633027 - 23633199
Alignment:
Q  205 tgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttga 303  Q
    |||||||| | | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23633027 tgttatttgaagttgtgtgatttaaagatgtgttatacaaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaagatgtaatatttga 23633126  T
Q  304 tgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatt 376  Q
    ||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  23633127 tgacgatgctatttaaagatgtgttatataaagatttgctatttaaagatatgttatataaagatgtgttatt 23633199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 217 - 357
Target Start/End: Original strand, 9132275 - 9132415
Alignment:
Q  217 atgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttat 315  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||  ||||||| | || ||  ||    
T  9132275 atgtatgatttaaagatgtgttatataaagatgtgttatttgaagttgtgggatttaaagatgtgttatataaagatgtgttatttgaagttg-tgcgat 9132373  T
Q  316 ttaaagatgtgttatataaagattttctatttgaagatgtgt 357  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9132374 ttaaagatgtgttatataaagatgtgctatttgaagatgtgt 9132415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 327
Target Start/End: Complemental strand, 90344 - 90209
Alignment:
Q  193 tatttgatgacgtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgattt-aaaatgtgttatataaaga 291  Q
    |||||||||| ||||||| ||| ||||||  || |||| |||||||||||||||||||| ||||||||||||||| |||| || |||||||| |||||||    
T  90344 tatttgatgatgtgttatataaagatgtgctatataaaaatgtgttatataaagatgtgttatttgaagatgtgtaatttcaagatgtgttagataaaga 90245  T
Q  292 tgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    ||| || ||||| |||||||||||||||||||||||    
T  90244 tgtgatgtttgacgatgatgttatttaaagatgtgt 90209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 41137830 - 41137954
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | | ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||| ||| ||||||| |||||||    
T  41137830 gtgttatttgaagttgtgtgatttaaagatgtgttatacaaagatgtgctatttgaatatgtgtgatttaaatatgtgttttattaagatgtgatatttg 41137929  T
Q  303 atgatgatgttatttaaagatgtgt 327  Q
    ||||||| | |||||||| ||||||    
T  41137930 atgatgaggctatttaaatatgtgt 41137954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 9132307 - 9132438
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | | |||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||  ||||||    
T  9132307 gtgttatttgaagttgtgggatttaaagatgtgttatataaagatgtgttatttgaagttgtgcgatttaaagatgtgttatataaagatgtgctatttg 9132406  T
Q  303 atgatgatgttatttaaagatgtgttatataaa 335  Q
    | |||| |||  |||||| | ||||||||||||    
T  9132407 aagatg-tgtggtttaaatacgtgttatataaa 9132438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 12785342 - 12785245
Alignment:
Q  232 atgtgttatataaagatgtgctatt-tgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| || |||| |||||||    
T  12785342 atgtgttatataaagatgtgtttttctgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatgatgctacttaatgatgtgt 12785245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 9132352 - 9132474
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | | |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||  |||| ||    
T  9132352 gtgttatttgaagttgtgcgatttaaagatgtgttatataaagatgtgctatttgaagatgtgtggtttaaatacgtgttatataaa-atg-gatatgtg 9132449  T
Q  303 atgatgatgttatttaaagatgtgt 327  Q
    | |||| || |||||||||||||||    
T  9132450 acgatggtgctatttaaagatgtgt 9132474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 52273022 - 52272931
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||||| ||| ||||||||||||||| |||||| ||||||||||||| | |||||||||||||||| |||| |||||||||| || |||||    
T  52273022 gtgttatataaagatgtgtgatttaaagatgtgtcatataaagatgtgatgtttgaagatgtgtgatataaagatgtgttatacaacgatgt 52272931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 371
Target Start/End: Original strand, 9132263 - 9132384
Alignment:
Q  250 tgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttg 348  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||  ||||||| | || ||  ||||||||||||||||||||||||| |  ||||||    
T  9132263 tgctatttgaaaatgtatgatttaaagatgtgttatataaagatgtgttatttgaagttg-tgggatttaaagatgtgttatataaagatgtgttatttg 9132361  T
Q  349 aagatgtgttatataaagatgtg 371  Q
    ||| ||||  || ||||||||||    
T  9132362 aagttgtgcgatttaaagatgtg 9132384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 242 - 371
Target Start/End: Complemental strand, 52273029 - 52272900
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattt 340  Q
    |||||||||| ||| | ||||||||||||||||| |||||| |||||||||||| || ||||| |||| ||| || ||||||||||||||| || ||| |    
T  52273029 taaagatgtgttatataaagatgtgtgatttaaagatgtgtcatataaagatgtgatgtttgaagatg-tgtgatataaagatgtgttatacaacgatgt 52272931  T
Q  341 tctatttgaagatgtgttatataaagatgtg 371  Q
     |||| | |||||||| ||| ||||||||||    
T  52272930 gctatataaagatgtgctatctaaagatgtg 52272900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 52273049 - 52272967
Alignment:
Q  297 tatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |   |||| ||||||||| ||||||||||||||| |||||    
T  52273049 tatttgacgatgatgctatttaaagatgtgttatataaagatgtgtgatttaaagatgtgtcatataaagatgtgatgtttga 52272967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 41137801 - 41137919
Alignment:
Q  220 tgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttattta 318  Q
    ||||||||||  ||||| | |||| ||||||| ||||||||| ||||||||||||| |||||||||| ||||||||  |||||||  ||| ||| |||||    
T  41137801 tgtgatttaatgatgtggtttatatagatgtgttatttgaagttgtgtgatttaaagatgtgttatacaaagatgtgctatttgaatatg-tgtgattta 41137899  T
Q  319 aagatgtgttatataaagat 338  Q
    || ||||||| ||| |||||    
T  41137900 aatatgtgttttattaagat 41137919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 23633166 - 23633224
Alignment:
Q  313 tatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||| |||||||||||||| |  |||| ||||||||||||||||||||||||    
T  23633166 tatttaaagatatgttatataaagatgtgttattcgaagatgtgttatataaagatgtg 23633224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 12785373 - 12785268
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttata-taaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||||| ||||||||||||| ||||||||  ||| |||||| |||||||||||| |  | ||||| |   |||| |||||||||||||||||||||||    
T  12785373 aaaatgtgctatataaagatgtgatatttga--atg-tgttatataaagatgtgtttttctgaagatgtgtgatttaaagatgtgttatataaagatgtg 12785277  T
Q  372 atatttgac 380  Q
    |||||||||    
T  12785276 atatttgac 12785268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 12785312 - 12785264
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  12785312 gatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatg 12785264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 90345 - 90278
Alignment:
Q  312 ttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||| | |||||||||||||||||| | |||| | || |||||||||||||||||||| |||||||    
T  90345 ttatttgatgatgtgttatataaagatgtgctatataaaaatgtgttatataaagatgtgttatttga 90278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 9132338 - 9132407
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||| |||||||||||||| | ||| | | | |||| ||||||||||||||||||||||| |||||||    
T  9132338 tgttatataaagatgtgttatttgaagttgtgcgatttaaagatgtgttatataaagatgtgctatttga 9132407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 90335 - 90232
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatat 375  Q
    |||||||||||||||||||  ||| | |  ||| |||||| |||||||||||||| | ||||| |   |||| ||||||||||| ||||||||||||| |    
T  90335 atgtgttatataaagatgtgctatataaaaatg-tgttatataaagatgtgttatttgaagatgtgtaatttcaagatgtgttagataaagatgtgatgt 90237  T
Q  376 ttgac 380  Q
    |||||    
T  90236 ttgac 90232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 23633110 - 23633223
Alignment:
Q  182 aaagatgtgaatatttgatgacg-tgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgt 279  Q
    |||||||| |||||||||||||| || ||||||| ||||||| || |||| || || ||| ||||||| || ||| | ||||||||| |||  || ||||    
T  23633110 aaagatgt-aatatttgatgacgatgctatttaaagatgtgttatataaagatttgctatttaaagatatgttatataaagatgtgttattcgaagatgt 23633208  T
Q  280 gttatataaagatgt 294  Q
    |||||||||||||||    
T  23633209 gttatataaagatgt 23633223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 90351 - 90271
Alignment:
Q  290 gatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||| |||||||||||| |||||| |||||||||| |||||||| || |  ||| | |||||||||||| | ||||||||    
T  90351 gatgtattatttgatgatg-tgttatataaagatgtgctatataaaaatgtgttatataaagatgtgttatttgaagatgtg 90271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 9132293 - 9132362
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||| |||||||||||||| | ||| | |   |||| ||||||||||||||||||||||| |||||||    
T  9132293 tgttatataaagatgtgttatttgaagttgtgggatttaaagatgtgttatataaagatgtgttatttga 9132362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 12785412 - 12785343
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||||| | ||| | |||||||||||| ||  |||| || ||||| ||||||||||||||||||||||    
T  12785412 tgttatttgacgatatattatataaagatgtttcatttaaaaatgtgctatataaagatgtgatatttga 12785343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 41137850 - 41137907
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||||||||||||||| |||||| | ||||||||| |||||| || |||| |||||    
T  41137850 atttaaagatgtgttatacaaagatgtgctatttgaatatgtgtgatttaaatatgtg 41137907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 237 - 371
Target Start/End: Complemental strand, 9882631 - 9882495
Alignment:
Q  237 ttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaa 335  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  9882631 ttatataaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaagatgtaatatttgatgatgatgctatttgaagatgtgttatataaa 9882532  T
Q  336 gattttctatttgaagatg-tgttatataaagatgtg 371  Q
    ||| |  ||||||| |||| || ||| ||||||||||    
T  9882531 gatgtgatatttgatgatgatgctatttaaagatgtg 9882495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 338
Target Start/End: Complemental strand, 12577224 - 12577091
Alignment:
Q  205 tgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttga 303  Q
    |||||||| | ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |    
T  12577224 tgttatttgaagatgtgtgatttaaagatgtattatataaatatgtgctatttgaagatgtgtgatttaaagatgtgttatataaagatgtgagatttaa 12577125  T
Q  304 tgatgatgttatttaaagatgtgttatataaagat 338  Q
     || | ||||||  ||||||||| |||||||||||    
T  12577124 agacg-tgttatacaaagatgtgctatataaagat 12577091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 9882607 - 9882494
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg-tgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgtt 313  Q
    ||||||||||||||| |||||||||||||||||||  ||||||| |||| ||  |||| || ||||||||||||||||||| |||||||||||||||| |    
T  9882607 gatgtgtgatttaaagatgtgttatataaagatgtaatatttgatgatgatgctatttgaagatgtgttatataaagatgtgatatttgatgatgatgct 9882508  T
Q  314 atttaaagatgtgt 327  Q
    ||||||||||||||    
T  9882507 atttaaagatgtgt 9882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 40387854 - 40387764
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgattt--aaaatgtgttatataaagat 292  Q
    ||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  || |||||| ||||||||||    
T  40387854 gtgttatttgaagatgtgtgatttaaagatgagttatataaagatgtgctatttgaagatgtgtgattttaaagatgtgtcatataaagat 40387764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 371
Target Start/End: Complemental strand, 12577232 - 12577103
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattt 340  Q
    ||||||| || ||||||||||||||||||||||| |||| ||||||||| ||||  ||||||| |||| ||| ||||||||||||||||||||||||| |    
T  12577232 taaagatatgttatttgaagatgtgtgatttaaagatgtattatataaatatgtgctatttgaagatg-tgtgatttaaagatgtgttatataaagatgt 12577134  T
Q  341 tctatttgaagatgtgttatataaagatgtg 371  Q
       |||| |||| |||||||| |||||||||    
T  12577133 gagatttaaagacgtgttatacaaagatgtg 12577103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 40387865 - 40387764
Alignment:
Q  238 tatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgtta-tttaaagatgtgttatataaa 335  Q
    |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||  ||||||| |||| ||| | ||||||||||||| |||||||    
T  40387865 tatataaagatgtgttatttgaagatgtgtgatttaaagatgagttatataaagatgtgctatttgaagatg-tgtgattttaaagatgtgtcatataaa 40387767  T
Q  336 gat 338  Q
    |||    
T  40387766 gat 40387764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 42145692 - 42145629
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||    
T  42145692 atgtgttatataaagatgtgttatttgaatatgtgtgatttaaagatgtgtaatataaagatgt 42145629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 40387865 - 40387791
Alignment:
Q  282 tatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgt 357  Q
    |||||||||||||  ||||||| |||| ||| ||||||||||| ||||||||||||| | ||||||||||||||||    
T  40387865 tatataaagatgtgttatttgaagatg-tgtgatttaaagatgagttatataaagatgtgctatttgaagatgtgt 40387791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 17289939 - 17289831
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgtta 314  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||| ||||||| || ||| ||||||   ||| |   ||||||||||||||||| | ||    
T  17289939 gatgtgtgatttaaagatgtgttctataaagatgtgttatttgaatatgtgtggttaaaagatgtgtgtaatata---gtaatatttgatgatga-gcta 17289844  T
Q  315 tttaaagatgtgt 327  Q
    |||||||||||||    
T  17289843 tttaaagatgtgt 17289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 9882555 - 9882518
Alignment:
Q  342 ctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9882555 ctatttgaagatgtgttatataaagatgtgatatttga 9882518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 1216987 - 1216943
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaa 320  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  1216987 atgtgttatataaagatgtgatatttgatgatgatgctatttaaa 1216943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 42145692 - 42145598
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||||||||||||||||  |||||||  ||| ||| |||||||||||||| |||||||||| |   || | |||||||||||| ||||||||||    
T  42145692 atgtgttatataaagatgtgttatttgaatatg-tgtgatttaaagatgtgtaatataaagatgtgtcatgtaaagatgtgttatctaaagatgtg 42145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 9882648 - 9882564
Alignment:
Q  295 aatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    ||||||||||||||   |||| |||||||||| ||| | ||||| |   |||| |||||||||||||||||||||| ||||||||    
T  9882648 aatatttgatgatgtgtttatataaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaagatgtaatatttga 9882564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 12577150 - 12577079
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa 275  Q
    ||||||| ||| |||||| |||||||| | |||||||| ||||||||||||| | |||||| || |||||||    
T  12577150 gtgttatataaagatgtgagatttaaagacgtgttatacaaagatgtgctatataaagatgagttatttaaa 12577079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 17289958 - 17289888
Alignment:
Q  286 taaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgt 357  Q
    |||||||||||| ||||| |||| ||| ||||||||||||||| ||||||||| |  |||||||| ||||||    
T  17289958 taaagatgtaatgtttgaagatg-tgtgatttaaagatgtgttctataaagatgtgttatttgaatatgtgt 17289888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 17289958 - 17289896
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttga 303  Q
    |||||||||  | ||||||||||||||||||||| ||||||| |||||||||||  |||||||    
T  17289958 taaagatgtaatgtttgaagatgtgtgatttaaagatgtgttctataaagatgtgttatttga 17289896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 379
Target Start/End: Complemental strand, 1216989 - 1216960
Alignment:
Q  350 agatgtgttatataaagatgtgatatttga 379  Q
    ||||||||||||||||||||||||||||||    
T  1216989 agatgtgttatataaagatgtgatatttga 1216960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 12577167 - 12577072
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||| || |||||||||| ||| | |||||||| |||||||| | |||||||| ||||||||  ||| | | ||||| |||||||||||||||||    
T  12577167 atgtgtgatttaaagatgtgttatataaagatgtgagatttaaagacgtgttatacaaagatgtgctatataaagatga-gttatttaaagatgtgt 12577072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 371
Target Start/End: Original strand, 29496761 - 29496928
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | | ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||  ||||||    
T  29496761 gtgttatttgaagttgtgtgatttaaagatgtgttatataaacatgtgctatttgaagttgtgtgatttaaagatgtgttatataaagatgtgctatttg 29496860  T
Q  303 atgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    | | || ||| |||||||||||||||||||||| || |  ||||| ||||||||| || || |||||||    
T  29496861 aagttg-tgtgatttaaagatgtgttatataaatatgtgttatttaaagatgtgtgatttagagatgtg 29496928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 371
Target Start/End: Original strand, 29496820 - 29496973
Alignment:
Q  218 tgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatt 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||  ||||| | |||| ||| |||    
T  29496820 tgtgtgatttaaagatgtgttatataaagatgtgctatttgaagttgtgtgatttaaagatgtgttatataaatatgtgttatttaaagatg-tgtgatt 29496918  T
Q  317 taaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    || ||||||||||||||||||| |   || | |||||||||||| ||||||||||    
T  29496919 tagagatgtgttatataaagatgtgtcatataaagatgtgttatctaaagatgtg 29496973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 227 - 371
Target Start/End: Original strand, 29496739 - 29496883
Alignment:
Q  227 taaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgt 325  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||| ||||  ||||||| | || ||| ||||||||||||    
T  29496739 taaatatgtgttatatatagatgtgttatttgaagttgtgtgatttaaagatgtgttatataaacatgtgctatttgaagttg-tgtgatttaaagatgt 29496837  T
Q  326 gttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||| | |||||||||| ||||| || ||||||||||    
T  29496838 gttatataaagatgtgctatttgaagttgtgtgatttaaagatgtg 29496883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 39436934 - 39437016
Alignment:
Q  193 tatttgatgacgtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa 275  Q
    ||||||| || ||||||||||| ||||||||||||| | ||||||||||||||||| | | || ||||||||||| |||||||    
T  39436934 tatttgacgatgtgttatttaaagatgtgtgatttagagatgtgttatataaagatctaccatatgaagatgtgttatttaaa 39437016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 29496698 - 29496838
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtg-tgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgtta 329  Q
    |||| |||| ||| |||| | |||||||||||||| |||  |||| |||||||||||| ||||||  ||||||| | || ||| ||||||||||||||||    
T  29496698 atgtattatttaatgatgagttatttgaagatgtgttgacataaatatgtgttatatatagatgtgttatttgaagttg-tgtgatttaaagatgtgtta 29496796  T
Q  330 tataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||| || | |||||||||| ||||| || ||||||||||    
T  29496797 tataaacatgtgctatttgaagttgtgtgatttaaagatgtg 29496838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 23959861 - 23959914
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgattt-aaaatgtgttatataaagatgt 294  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  23959861 taaagatgcgctatttgaagatgtatgatttaaaaatgtgttatataaagatgt 23959914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 19076678 - 19076602
Alignment:
Q  217 atgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||||||||||  ||||| |||| |||||||||| |||||||||||| ||||||| | ||||||| |||||||||    
T  19076678 atgtgtgatttaaat--gtgttgtatagagatgtgctacttgaagatgtgtaatttaaagacgtgttatttaaagatgt 19076602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 29496896 - 29496943
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtg 251  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  29496896 gtgttatttaaagatgtgtgatttagagatgtgttatataaagatgtg 29496943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 39436942 - 39437023
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||| ||||| ||||||||||||||| | ||||||||||||||||| ||  || ||| |||| ||||||||||||||||||    
T  39436942 gatgtgttatttaaagatgtgtgatttagagatgtgttatataaagatctaccatatgaagatg-tgttatttaaagatgtgt 39437023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 39436965 - 39437022
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||| ||||||||||||||||||| | | || |||||||||||||| ||||||||||    
T  39436965 atttagagatgtgttatataaagatctaccatatgaagatgtgttatttaaagatgtg 39437022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 14048170 - 14048126
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaa 289  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||    
T  14048170 gatgtgctatgtgaagatgtgtgctttaaagatgtgttatataaa 14048126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 23973215 - 23973091
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||| ||| ||||||| |||| || |||| |||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||||    
T  23973215 gtgttatataaagatgtgttatttgaagatgtattatataatgatgtgctatttgaaattgtgtgatttaaagatgtgttatataaagatgtgatatttg 23973116  T
Q  303 atgatgatgttatttaaagatgtgt 327  Q
    |||||||||||||||||||||||||    
T  23973115 atgatgatgttatttaaagatgtgt 23973091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 15703836 - 15703713
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||    
T  15703836 gtgttatttgaagatgtgttatttgaagatgtgttatataaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaa-atatgatatttg 15703738  T
Q  303 atgatgatgttatttaaagatgtgt 327  Q
    | |||| || |||||||||||||||    
T  15703737 acgatggtgctatttaaagatgtgt 15703713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 11150667 - 11150571
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| || |||| |||||||    
T  11150667 atgtgttatataaaaatgtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatgatgctacttaatgatgtgt 11150571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 380
Target Start/End: Complemental strand, 15703922 - 15703736
Alignment:
Q  193 tatttgatgacgtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaaga 291  Q
    ||||||| || ||||||| ||| | ||||| |||| || ||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||||| | ||||    
T  15703922 tatttgacgaagtgttatataaagttgtgttatttgaagatgtggtatacaaagatgtgttatttgaagatttgtgatttaaagatgtgttatttgaaga 15703823  T
Q  292 tgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||  ||||||| |||| |||||| |||||||||| ||| | ||||| |   |||| ||||||||||||||||| || |||||||||||    
T  15703822 tgtgttatttgaagatg-tgttatataaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaa-atatgatatttgac 15703736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 357
Target Start/End: Original strand, 42597244 - 42597369
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttat 330  Q
    |||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| ||||  ||||||| |||| ||| ||||||||| |||||||    
T  42597244 atgtgttatataaatatgtactatttgaagatgtatgatttaaagatgtgttatataaatatgtgttatttgaagatg-tgtgatttaaagacgtgttat 42597342  T
Q  331 ataaagattttctatttgaagatgtgt 357  Q
     ||||||| | ||| || |||||||||    
T  42597343 ttaaagatgtgctagttaaagatgtgt 42597369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 19612744 - 19612835
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgtt-atataaagatg 293  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||||| |||||||||||    
T  19612744 gtgttatttgaagatgtctgatttaaatatgtgttatataaagatgtgatatttgtagatgtatgatttaaagatgtgttgatataaagatg 19612835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 371
Target Start/End: Original strand, 25127107 - 25127243
Alignment:
Q  237 ttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgtt-atataa 334  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||| || |  ||||||   ||| ||| |||||| |||||||| ||||||    
T  25127107 ttatataaagatgtattatttgaagatgtgtgatttaaagatgtgttatataaaaatatgttatttggaaatg-tgtgatttaaggatgtgttgatataa 25127205  T
Q  335 agattttctatttgaagatgtgtt-atataaagatgtg 371  Q
    |||| |  |||||||||||||||| |||||||||||||    
T  25127206 agatgtgttatttgaagatgtgttaatataaagatgtg 25127243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 371
Target Start/End: Original strand, 19612737 - 19612867
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgtt-atataaagatt 339  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||  |||| | | ||||||||||||||| ||||||||||     
T  19612737 taaagatgtgttatttgaagatgtctgatttaaatatgtgttatataaagatgtgatatttgtagatg-tatgatttaaagatgtgttgatataaagatg 19612835  T
Q  340 ttctatttgaagatgtgttatataaagatgtg 371  Q
       |||   |||||||| ||||||||||||||    
T  19612836 cgttatacaaagatgtgctatataaagatgtg 19612867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 42597273 - 42597352
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | ||||||| |||||||||    
T  42597273 gatgtatgatttaaagatgtgttatataaatatgtgttatttgaagatgtgtgatttaaagacgtgttatttaaagatgt 42597352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 11150698 - 11150594
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtga 372  Q
    |||||||| ||||||||||||| ||||||||  ||| |||||| |||| ||||||||| | ||||| |   |||| ||||||||||||||||||||||||    
T  11150698 aaaatgtgctatataaagatgtgatatttga--atg-tgttatataaaaatgtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtga 11150602  T
Q  373 tatttgac 380  Q
    ||||||||    
T  11150601 tatttgac 11150594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 42597242 - 42597344
Alignment:
Q  274 aaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgat 373  Q
    |||||||||||||||| ||||| ||||||| |||| | | |||||||||||||||||||||| || |  ||||||||||||||| || |||||| ||| |    
T  42597242 aaatgtgttatataaatatgtactatttgaagatg-tatgatttaaagatgtgttatataaatatgtgttatttgaagatgtgtgatttaaagacgtgtt 42597340  T
Q  374 attt 377  Q
    ||||    
T  42597341 attt 42597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 11150650 - 11150590
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  11150650 gtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatg 11150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 18875417 - 18875321
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||||||||||| ||| | | ||||||||||||||| |  || ||||||||||||| |||||| | |||| || |||||||||||||||    
T  18875417 atgtgttatataaagatgtgttatataaggatgtgtgatttaaatacatgctatataaagatgtgatatttcacgatggtgctatttaaagatgtgt 18875321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 9564917 - 9564992
Alignment:
Q  253 tatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    ||||||| ||||||||||||||| ||||| ||||||| ||||| ||||||||||||| || || ||||||||||||    
T  9564917 tatttgaggatgtgtgatttaaagatgtgctatataaggatgtgatatttgatgatggtgctaattaaagatgtgt 9564992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 25127122 - 25127225
Alignment:
Q  207 ttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaa-aatgtgtt-atataaagatgtaatatttgat 304  Q
    |||||| | ||||||||||||||| |||||||||||||| || || |||||| | |||||||||||||  ||||||| ||||||||||||  |||||||     
T  25127122 ttatttgaagatgtgtgatttaaagatgtgttatataaaaatatgttatttggaaatgtgtgatttaaggatgtgttgatataaagatgtgttatttgaa 25127221  T
Q  305 gatg 308  Q
    ||||    
T  25127222 gatg 25127225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 37838560 - 37838623
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| | ||||||| |||||||||    
T  37838560 atgtgttatataaatatgtgttatttgaagatgtgtgatttaaagacgtgttatttaaagatgt 37838623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 37838577 - 37838644
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatt 271  Q
    ||||||||| | ||||||||||||||| | ||||||| ||||||||||||| || |||||||||||||    
T  37838577 gtgttatttgaagatgtgtgatttaaagacgtgttatttaaagatgtgctagttaaagatgtgtgatt 37838644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 42597306 - 42597373
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatt 271  Q
    ||||||||| | ||||||||||||||| | ||||||| ||||||||||||| || |||||||||||||    
T  42597306 gtgttatttgaagatgtgtgatttaaagacgtgttatttaaagatgtgctagttaaagatgtgtgatt 42597373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 23973235 - 23973115
Alignment:
Q  257 tgaagatgtgtgatttaaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttct-atttgaagatgt 355  Q
    |||||||||||| ||||||  |||||||||||||||||  ||||||| |||| | |||| ||| |||||| ||| | || ||| | | |||| |||||||    
T  23973235 tgaagatgtgtgttttaaag-gtgttatataaagatgtgttatttgaagatg-tattatataatgatgtgctatttgaa-attgtgtgatttaaagatgt 23973139  T
Q  356 gttatataaagatgtgatatttga 379  Q
    ||||||||||||||||||||||||    
T  23973138 gttatataaagatgtgatatttga 23973115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 9564916 - 9564973
Alignment:
Q  207 ttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||||| ||||    
T  9564916 ttatttgaggatgtgtgatttaaagatgtgctatataaggatgtgatatttgatgatg 9564973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 18875400 - 18875347
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctattt 257  Q
    ||||||| |||||||||||||||||||||  || |||||||||||||| |||||    
T  18875400 gtgttatataaggatgtgtgatttaaatacatgctatataaagatgtgatattt 18875347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 19612734 - 19612798
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttg 378  Q
    ||||||||||||||||| | ||||| |   |||| || |||||||||||||||||||||||||||    
T  19612734 atttaaagatgtgttatttgaagatgtctgatttaaatatgtgttatataaagatgtgatatttg 19612798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 15242113 - 15242180
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatt 271  Q
    ||||||||| |  |||||||||||||| | ||||||| ||||||||||||| || || ||||||||||    
T  15242113 gtgttatttgaaaatgtgtgatttaaagacgtgttatttaaagatgtgctagttaaatatgtgtgatt 15242180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 25127177 - 25127228
Alignment:
Q  217 atgtgtgatttaaatatgtgtt-atataaagatgtgctatttgaagatgtgt 267  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||||||||    
T  25127177 atgtgtgatttaaggatgtgttgatataaagatgtgttatttgaagatgtgt 25127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 23973150 - 23973092
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatg-tgttatataaagatgtg 371  Q
    ||||||||||||||||||||||||| |  ||||||| |||| |||||| ||||||||||    
T  23973150 atttaaagatgtgttatataaagatgtgatatttgatgatgatgttatttaaagatgtg 23973092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 13885308 - 13885337
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa 275  Q
    ||||||||||||||||||||||||||||||    
T  13885308 gatgtgctatttgaagatgtgtgatttaaa 13885337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 15242106 - 15242159
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||||| |||||||| |||||||||||||| | ||||||| |||||||||    
T  15242106 taaagatgtgttatttgaaaatgtgtgatttaaagacgtgttatttaaagatgt 15242159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 25126935 - 25126988
Alignment:
Q  82 aaataatatattatatttttaaagtgaatttttgaagataattgttatagtgaa 135  Q
    ||||||||||||||||||||||||| | ||| |  |||||||||||||| ||||    
T  25126935 aaataatatattatatttttaaagtaactttgtagagataattgttataatgaa 25126988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 37838560 - 37838640
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgt 357  Q
    |||||||||||||| ||||  ||||||| |||| ||| ||||||||| ||||||| ||||||| | ||| || |||||||||    
T  37838560 atgtgttatataaatatgtgttatttgaagatg-tgtgatttaaagacgtgttatttaaagatgtgctagttaaagatgtgt 37838640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 14644913 - 14644869
Alignment:
Q  283 atataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||| |||||| | ||||||| |||||||||||||||    
T  14644913 atataaagatgtgatattttacgatgatgctatttaaagatgtgt 14644869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 20264537 - 20264641
Alignment:
Q  222 tgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaag 321  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||| |||||||| |||||||||||||||||    
T  20264537 tgatttaaagatgtgttatataaagatgtgctatttgaagatgtgtgattt-aaggatgttatataaagatgtgatatttgacgatgatgttatttaaag 20264635  T
Q  322 atgtgt 327  Q
    ||||||    
T  20264636 atgtgt 20264641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 16092687 - 16092564
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaata-tttgatgatgatgtt 313  Q
    ||||||||||||||  ||||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| ||| |||||||||| |||     
T  16092687 gatgtgtgatttaatgatgtgctatataaagatgtgttatttgaagatgtttgatttaaagatgtgttatataaaaatgtgatattttgatgatg-tgtc 16092589  T
Q  314 atttaaagatgtgttatataaagat 338  Q
    || |||||||||||||| |||||||    
T  16092588 atataaagatgtgttatctaaagat 16092564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 357
Target Start/End: Complemental strand, 37379791 - 37379666
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttat 330  Q
    |||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| ||||  ||||||| |||| ||| ||||||||| |||||||    
T  37379791 atgtgttatataaatatgtactatttgaagatgtatgatttaaagatgtgttatataaatatgtgttatttgaagatg-tgtgatttaaagacgtgttat 37379693  T
Q  331 ataaagattttctatttgaagatgtgt 357  Q
     ||||||| | ||| || |||||||||    
T  37379692 ttaaagatgtgctagttaaagatgtgt 37379666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 20264502 - 20264640
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttat 330  Q
    |||||||||||||||||||| |||||||| || | ||||||||| |||||||||||||||||||  ||||||| |||| ||| |||||| ||  ||||||    
T  20264502 atgtgttatataaagatgtgttatttgaatatttatgatttaaagatgtgttatataaagatgtgctatttgaagatg-tgtgatttaagga--tgttat 20264598  T
Q  331 ataaagattttctatttgaagatg-tgttatataaagatgtg 371  Q
    |||||||| |  ||||||| |||| |||||| ||||||||||    
T  20264599 ataaagatgtgatatttgacgatgatgttatttaaagatgtg 20264640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 37379762 - 37379683
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | ||||||| |||||||||    
T  37379762 gatgtatgatttaaagatgtgttatataaatatgtgttatttgaagatgtgtgatttaaagacgtgttatttaaagatgt 37379683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 371
Target Start/End: Complemental strand, 16092701 - 16092576
Alignment:
Q  247 atgtgctatttgaagatgtgtgatttaa-aatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttcta- 344  Q
    ||||| ||||||||||||||||||||||  ||||| |||||||||||||  ||||||| |||| | | |||||||||||||||||||||| || |  ||     
T  16092701 atgtgatatttgaagatgtgtgatttaatgatgtgctatataaagatgtgttatttgaagatg-tttgatttaaagatgtgttatataaaaatgtgatat 16092603  T
Q  345 tttgaagatgtgttatataaagatgtg 371  Q
    ||||| ||||||| |||||||||||||    
T  16092602 tttgatgatgtgtcatataaagatgtg 16092576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 37379793 - 37379691
Alignment:
Q  274 aaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgat 373  Q
    |||||||||||||||| ||||| ||||||| |||| | | |||||||||||||||||||||| || |  ||||||||||||||| || |||||| ||| |    
T  37379793 aaatgtgttatataaatatgtactatttgaagatg-tatgatttaaagatgtgttatataaatatgtgttatttgaagatgtgtgatttaaagacgtgtt 37379695  T
Q  374 attt 377  Q
    ||||    
T  37379694 attt 37379691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 38991922 - 38991836
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||| ||| | ||||||||||||||||| || |  ||||||||||||| |||||||| ||||||| |||||||||||||||    
T  38991922 taaagatgtgttatataaagatgtgtgatttaaagattttctatataaagatgtgatatttgacgatgatgctatttaaagatgtgt 38991836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 27401575 - 27401636
Alignment:
Q  234 gtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  27401575 gtgttatataaatatgtgttatttgaagatgtgtgatttaaagatgtgtcatataaagatgt 27401636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 375
Target Start/End: Original strand, 20264502 - 20264600
Alignment:
Q  276 atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatat 375  Q
    |||||||||||||||||||  |||||||  ||  | | ||||||||||||||||||||||||| | |||||||||||||||| || ||| ||||| ||||    
T  20264502 atgtgttatataaagatgtgttatttgaatatt-tatgatttaaagatgtgttatataaagatgtgctatttgaagatgtgtgatttaaggatgttatat 20264600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 27401590 - 27401653
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgt 267  Q
    ||||||||| | ||||||||||||||| |||||| ||||||||||||| ||||| |||||||||    
T  27401590 gtgttatttgaagatgtgtgatttaaagatgtgtcatataaagatgtgttatttaaagatgtgt 27401653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 37379729 - 37379662
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatt 271  Q
    ||||||||| | ||||||||||||||| | ||||||| ||||||||||||| || |||||||||||||    
T  37379729 gtgttatttgaagatgtgtgatttaaagacgtgttatttaaagatgtgctagttaaagatgtgtgatt 37379662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 16092654 - 16092562
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgcta-tttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||||||| | ||||| ||||||||| |||||||||||||| ||||| || ||||| ||||||| || |||| ||||||||| |||||||||    
T  16092654 gtgttatttgaagatgtttgatttaaagatgtgttatataaaaatgtgatattttgatgatgtgtcatataaagatgtgttatctaaagatgt 16092562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 38991925 - 38991859
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    ||||||||||||||||||||||||| |   |||| ||||| |  |||||||||||||||||||||||    
T  38991925 atttaaagatgtgttatataaagatgtgtgatttaaagattttctatataaagatgtgatatttgac 38991859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 20264505 - 20264574
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||| |||||||||||||| | || ||||   |||| ||||||||||||||||||||||| |||||||    
T  20264505 tgttatataaagatgtgttatttgaatatttatgatttaaagatgtgttatataaagatgtgctatttga 20264574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 16092661 - 16092601
Alignment:
Q  317 taaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatattt 377  Q
    |||||||||||||| | ||||| ||  |||| ||||||||||||||||| |||||||||||    
T  16092661 taaagatgtgttatttgaagatgtttgatttaaagatgtgttatataaaaatgtgatattt 16092601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 20179979 - 20179919
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgtt-atataaagatgtg 371  Q
    |||| ||| |||||||||||||||||||| |  |||||||||||||||| |||||||||||||    
T  20179979 tgttgtttgaagatgtgttatataaagatgt--tatttgaagatgtgttgatataaagatgtg 20179919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 27401575 - 27401653
Alignment:
Q  278 gtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgt 357  Q
    |||||||||||| ||||  ||||||| |||| ||| |||||||||||||| |||||||||| |  ||||| |||||||||    
T  27401575 gtgttatataaatatgtgttatttgaagatg-tgtgatttaaagatgtgtcatataaagatgtgttatttaaagatgtgt 27401653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 38991970 - 38991899
Alignment:
Q  218 tgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||||||||||| |||||||||||      |||  ||||||||| |||||||||||| |||||||||||||||||||    
T  38991970 tgtgtgatttaaagatgtgttatat------gtgaaatttgaagaagtgtgatttaaagatgtgttatataaagatgt 38991899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 27401583 - 27401651
Alignment:
Q  227 taaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    |||||||||||||| | ||||||||  |||| ||||||||| || |||| ||||||||| |||||||||    
T  27401583 taaatatgtgttatttgaagatgtgtgatttaaagatgtgtcatataaagatgtgttatttaaagatgt 27401651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 38991915 - 38991855
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||| ||| ||||||||||||||| || |  |||||||||||||| ||||||| ||||    
T  38991915 gtgttatataaagatgtgtgatttaaagattttctatataaagatgtgatatttgacgatg 38991855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 38991930 - 38991898
Alignment:
Q  219 gtgtgatttaaatatgtgttatataaagatgtg 251  Q
    |||||||||||| ||||||||||||||||||||    
T  38991930 gtgtgatttaaagatgtgttatataaagatgtg 38991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 371
Target Start/End: Complemental strand, 993 - 826
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||||| ||||||||||| ||| |||||||||||||| ||||| ||||||||||||| ||||||||| ||||||| |||||||||||  ||||||    
T  993 gtgttatttaaagatgtgtgattcaaagatgtgttatataaatatgtgttatttgaagatgtttgatttaaagatgtgttctataaagatgtgttatttg 894  T
Q  303 atgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
       ||| ||| ||||||||||||||||||||||||| |  ||| ||| |||| | ||| ||||||||||    
T  893 catatg-tgtgatttaaagatgtgttatataaagatgtgatatctgatgatgagctatttaaagatgtg 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 948 - 824
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | ||||| ||||||||| ||||||| |||||||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||| ||    
T  948 gtgttatttgaagatgtttgatttaaagatgtgttctataaagatgtgttatttgcatatgtgtgatttaaagatgtgttatataaagatgtgatatctg 849  T
Q  303 atgatgatgttatttaaagatgtgtt 328  Q
    ||||||| | ||||||||||||||||    
T  848 atgatga-gctatttaaagatgtgtt 824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 1025 - 871
Alignment:
Q  217 atgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttat 315  Q
    |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||| ||| |||||||||||||| ||||  ||||||| |||| | | ||    
T  1025 atgtgtgatttaaagatgtgttatataaaaatgtgttatttaaagatgtgtgattcaaagatgtgttatataaatatgtgttatttgaagatg-tttgat 927  T
Q  316 ttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||| ||||||||| |  |||||| | |||||| || ||||||||||    
T  926 ttaaagatgtgttctataaagatgtgttatttgcatatgtgtgatttaaagatgtg 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 1041 - 916
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttcta 344  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| ||||  ||||| | |||| ||| ||| |||||||||||||||||| || |  ||    
T  1041 gatgtgctatttgaaaatgtgtgatttaaagatgtgttatataaaaatgtgttatttaaagatg-tgtgattcaaagatgtgttatataaatatgtgtta 943  T
Q  345 tttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||| | || ||||||||||    
T  942 tttgaagatgtttgatttaaagatgtg 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 378
Target Start/End: Complemental strand, 998 - 894
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtga 372  Q
    |||||||||||| |||||||||   |||  | |||| |||||| |||| ||||||||| | ||||| ||  |||| |||||||||| ||||||||||||     
T  998 aaaatgtgttatttaaagatgtgtgattcaaagatg-tgttatataaatatgtgttatttgaagatgtttgatttaaagatgtgttctataaagatgtgt 900  T
Q  373 tatttg 378  Q
    ||||||    
T  899 tatttg 894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 3472720 - 3472816
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  3472720 atgtgttatatgaagatgtgctatttaaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatgatgctatttaaagatgtgt 3472816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 52466242 - 52466342
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttg 302  Q
    ||||||||| | ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  52466242 gtgttatttgaagatgtatgatttaaagatgtggtatataaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttg 52466341  T
Q  303 a 303  Q
    |    
T  52466342 a 52466342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 3586296 - 3586214
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  3586296 gatgtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgatgatgatgctatttaaagatgtgt 3586214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 52466225 - 52466331
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttat 330  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||||||||  ||||||| |||| ||| |||||||||||||||||    
T  52466225 atgtgttatataaaaatgtgttatttgaagatgtatgatttaaagatgtggtatataaagatgtgctatttgaagatg-tgtgatttaaagatgtgttat 52466323  T
Q  331 ataaagat 338  Q
    ||||||||    
T  52466324 ataaagat 52466331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 18539017 - 18539152
Alignment:
Q  244 aagatgtgctatttgaagatgtgtgatttaaaa-tgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttc 342  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||| ||||  |||||||| | | | | ||||||||||||||||||||||||| |      
T  18539017 aagatgcgctatttaaagatgtgtgatttaaaaatgtgttatataaatatgtgttatttgattaagtt-tgatttaaagatgtgttatataaagatgtgt 18539115  T
Q  343 tatttgaagatgtgttatataaagatgtgatatttga 379  Q
     |||| |||||||||||| ||||| ||||||||||||    
T  18539116 gatttaaagatgtgttatgtaaaggtgtgatatttga 18539152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 39728066 - 39728163
Alignment:
Q  232 atgtgttatataaagatgtgctatt-tgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| || |||| |||||||    
T  39728066 atgtgttatataaagatgtgtttttctgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatgatgctacttaatgatgtgt 39728163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 15778144 - 15778230
Alignment:
Q  211 ttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgattt-aaaatgtg-ttatataaagatgta 295  Q
    |||| ||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||| |||||||| |||||||||||||||    
T  15778144 ttaaagatgtgtgattcaaagatgtgttatataaagatgtcttatttgaagatgtgtgatttaaaaatgtgtttatataaagatgta 15778230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18694494 - 18694571
Alignment:
Q  247 atgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagat 323  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||| || ||||| |||||||||||||||||||    
T  18694494 atgtgctatttgaagatgtttgatttcaagatgtgttatataaagatgtgatgtttgacgatgatgttatttaaagat 18694571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18710013 - 18710090
Alignment:
Q  247 atgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagat 323  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||| || ||||| |||||||||||||||||||    
T  18710013 atgtgctatttgaagatgtttgatttcaagatgtgttatataaagatgtgatgtttgacgatgatgttatttaaagat 18710090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 3476034 - 3475963
Alignment:
Q  308 gatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||| |||||||||||||||||||||||||| |   |||| |||||||||||||||||||||||||||||||    
T  3476034 gatgctatttaaagatgtgttatataaagatgtatgatttaaagatgtgttatataaagatgtgatatttga 3475963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 18539026 - 18539113
Alignment:
Q  208 tatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||| |||||||  | || ||||||||| |||||||||||||||||||    
T  18539026 tatttaaagatgtgtgatttaaaaatgtgttatataaatatgtgttatttgattaagtttgatttaaagatgtgttatataaagatgt 18539113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 371
Target Start/End: Original strand, 52466222 - 52466319
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||||||| ||||  ||||||| |||| | | ||||||||||||| ||||||||||| | |||||||||||||||| || ||||||||||    
T  52466222 aaaatgtgttatataaaaatgtgttatttgaagatg-tatgatttaaagatgtggtatataaagatgtgctatttgaagatgtgtgatttaaagatgtg 52466319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 3586306 - 3586233
Alignment:
Q  191 aatatttgatgacgtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||| || ||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  3586306 aatatttgacgatgtgttatttgaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgatgatg 3586233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 3262905 - 3263004
Alignment:
Q  229 aatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    ||||||||| || ||||||| ||  |||| |  ||||||||||| || ||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  3262905 aatatgtgtgatttaaagatatgtaatttaagaatgtgtgattttaagatgtgttatataaagatgtaatatttgacaatggtgttatttaaagatgtgt 3263004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 18539090 - 18539168
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaa 319  Q
    |||||||||| ||| | ||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||| |||||||    
T  18539090 taaagatgtgttatataaagatgtgtgatttaaagatgtgttatgtaaaggtgtgatatttgatgatgatgctatttaa 18539168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 3472741 - 3472797
Alignment:
Q  208 tatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  3472741 tatttaaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatg 3472797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 15778120 - 15778227
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtg-tta 329  Q
    |||||| || |||| |||||||| || ||||||||||||| ||| |||||||||||||||||||  ||||||| |||| ||| ||||||| ||||| |||    
T  15778120 atgtgtgatttaaaaatgtgctagttaaagatgtgtgattcaaagatgtgttatataaagatgtcttatttgaagatg-tgtgatttaaaaatgtgttta 15778218  T
Q  330 tataaagat 338  Q
    |||||||||    
T  15778219 tataaagat 15778227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 380
Target Start/End: Original strand, 3472704 - 3472793
Alignment:
Q  290 gatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||||| ||||||| |||| |||||| | |||||||| ||| ||||||| |   |||| ||||||||||||||||||||||||||||||||    
T  3472704 gatgtactatttgacgatg-tgttatatgaagatgtgctatttaaagatgtgtgatttaaagatgtgttatataaagatgtgatatttgac 3472793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 39728035 - 39728140
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttata-taaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||||| ||||||||||||| ||||||||  ||| |||||| |||||||||||| |  | ||||| |   |||| |||||||||||||||||||||||    
T  39728035 aaaatgtgctatataaagatgtgatatttga--atg-tgttatataaagatgtgtttttctgaagatgtgtgatttaaagatgtgttatataaagatgtg 39728131  T
Q  372 atatttgac 380  Q
    |||||||||    
T  39728132 atatttgac 39728140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 371
Target Start/End: Complemental strand, 3476025 - 3475889
Alignment:
Q  242 taaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttga----tgatga--tgttatttaaagatgtgttatataa 334  Q
    |||||||||| ||| | ||||||| ||||||||| ||||||||||||||||||| ||||||||    | | ||  ||| || ||||||||||||||| ||    
T  3476025 taaagatgtgttatataaagatgtatgatttaaagatgtgttatataaagatgtgatatttgaattttaaagatgtgtgatataaagatgtgttatacaa 3475926  T
Q  335 agattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||| | |||| | |||||||| ||| ||||||||||    
T  3475925 agatgtgctatataaagatgtgctatctaaagatgtg 3475889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 3476018 - 3475962
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaa 260  Q
    ||||||| ||| ||||| ||||||||| |||||||||||||||||||| ||||||||    
T  3476018 gtgttatataaagatgtatgatttaaagatgtgttatataaagatgtgatatttgaa 3475962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 39728096 - 39728144
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  39728096 gatgtgtgatttaaagatgtgttatataaagatgtgatatttgacgatg 39728144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 52466237 - 52466342
Alignment:
Q  273 aaaatgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtga 372  Q
    |||||||||||| | ||||||||  |||| | |||| || ||| |||||||||| ||| | ||||| |   |||| ||||||||||||||||||||||||    
T  52466237 aaaatgtgttatttgaagatgtatgatttaaagatg-tggtatataaagatgtgctatttgaagatgtgtgatttaaagatgtgttatataaagatgtga 52466335  T
Q  373 tatttga 379  Q
    |||||||    
T  52466336 tatttga 52466342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 3475960 - 3475904
Alignment:
Q  210 tttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtg 266  Q
    ||||| |||||||||| |||| |||||||||| ||||||||||||| | ||||||||    
T  3475960 tttaaagatgtgtgatataaagatgtgttatacaaagatgtgctatataaagatgtg 3475904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 18539097 - 18539157
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||| ||| ||||||||||||||| ||||||||| ||||| |||| ||||||| ||||    
T  18539097 gtgttatataaagatgtgtgatttaaagatgtgttatgtaaaggtgtgatatttgatgatg 18539157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 344 - 379
Target Start/End: Complemental strand, 3586273 - 3586238
Alignment:
Q  344 atttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||| |||||||||||||||||||||||||||||||    
T  3586273 atttaaagatgtgttatataaagatgtgatatttga 3586238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 18706231 - 18706266
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtg 251  Q
    ||||||||||||||| ||||||||||||||||||||    
T  18706231 gatgtgtgatttaaagatgtgttatataaagatgtg 18706266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 3262930 - 3262980
Alignment:
Q  209 atttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttga 259  Q
    ||||||| ||||||||||| || |||||||||||||||||||  |||||||    
T  3262930 atttaagaatgtgtgattttaagatgtgttatataaagatgtaatatttga 3262980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 15778161 - 15778214
Alignment:
Q  318 aaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||||||||||| |  ||||||||||||||| || |||| |||||    
T  15778161 aaagatgtgttatataaagatgtcttatttgaagatgtgtgatttaaaaatgtg 15778214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 18539085 - 18539130
Alignment:
Q  222 tgatttaaatatgtgttatataaagatgtgctatttgaagatgtgt 267  Q
    ||||||||| ||||||||||||||||||||  |||| |||||||||    
T  18539085 tgatttaaagatgtgttatataaagatgtgtgatttaaagatgtgt 18539130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 39727996 - 39728065
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttga 379  Q
    |||||||| | ||| | |||||||||||| ||  |||| || ||||| ||||||||||||||||||||||    
T  39727996 tgttatttgacgatatattatataaagatgtttcatttaaaaatgtgctatataaagatgtgatatttga 39728065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 3262945 - 3262981
Alignment:
Q  344 atttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||| |||||||||||||||||||||| |||||||||    
T  3262945 attttaagatgtgttatataaagatgtaatatttgac 3262981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 18694516 - 18694552
Alignment:
Q  344 atttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  18694516 atttcaagatgtgttatataaagatgtgatgtttgac 18694552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 18710035 - 18710071
Alignment:
Q  344 atttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  18710035 atttcaagatgtgttatataaagatgtgatgtttgac 18710071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 9547978 - 9547899
Alignment:
Q  216 gatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgt 294  Q
    ||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||    
T  9547978 gatgtgtgatttaaagatgtgttatataaagacgtgttatttgtagatgtgtgatttaaagatgtgttatataaagatgt 9547899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 27572930 - 27573013
Alignment:
Q  207 ttatttaaggatgtgtgatttaaatatgtgtt-atataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataa 288  Q
    |||||| | ||||||| |||| || ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  27572930 ttatttgatgatgtgttatttgaagatgtgttgatataaagatgtgctatttgaagatgtgtgttttaaagatgtgttatataa 27573013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 19892014 - 19891961
Alignment:
Q  222 tgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa 275  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  19892014 tgatttaaagatgtgttatataaagatgtgttatttgaaaatgtgtgatttaaa 19891961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 9547948 - 9547882
Alignment:
Q  201 gacgtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgt 267  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||| ||| | |||||||||    
T  9547948 gacgtgttatttgtagatgtgtgatttaaagatgtgttatataaagatgtgttatctaaagatgtgt 9547882  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 9547978 - 9547901
Alignment:
Q  261 gatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagat 338  Q
    ||||||||||||||| |||||||||||||||| ||  ||||||  |||| ||| |||||||||||||||||||||||||    
T  9547978 gatgtgtgatttaaagatgtgttatataaagacgtgttatttgtagatg-tgtgatttaaagatgtgttatataaagat 9547901  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 19770015 - 19770073
Alignment:
Q  322 atgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    ||||||||||||||||| |  ||||||||||||||| || |||||||||||||||||||    
T  19770015 atgtgttatataaagatgtgttatttgaagatgtgtaatttaaagatgtgatatttgac 19770073  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 19567678 - 19567738
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||  ||||||| ||||    
T  19567678 gtgttatttaaggatgtgtgaattaaagatgtgctatataaagatgttatatttgacgatg 19567738  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 19770015 - 19770058
Alignment:
Q  232 atgtgttatataaagatgtgctatttgaagatgtgtgatttaaa 275  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  19770015 atgtgttatataaagatgtgttatttgaagatgtgtaatttaaa 19770058  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 27572931 - 27573005
Alignment:
Q  297 tatttgatgatgatgttatttaaagatgtgtt-atataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||||||||| |||||||| |||||||||| |||||||||| | ||||||||||||||||  | ||||||||||    
T  27572931 tatttgatgatg-tgttatttgaagatgtgttgatataaagatgtgctatttgaagatgtgtgttttaaagatgtg 27573005  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 3851907 - 3851997
Alignment:
Q  219 gtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatg 308  Q
    ||||| |||||| || ||| ||||| ||||||||||| | ||||||||| || |||| ||||||||| |||||||||  ||||||||||||    
T  3851907 gtgtgctttaaagatttgtgatatagagatgtgctatataaagatgtgtcatataaagatgtgttatttaaagatgtgttatttgatgatg 3851997  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 19892012 - 19891955
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||||||||||||||| |  |||||||| |||||| || ||||||||||    
T  19892012 atttaaagatgtgttatataaagatgtgttatttgaaaatgtgtgatttaaagatgtg 19891955  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 19567674 - 19567753
Alignment:
Q  245 agatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagat 323  Q
    ||||||| ||||| | ||||||||| ||||| ||||| ||||||||||||| |||||||| |||| || || ||||||||    
T  19567674 agatgtgttatttaaggatgtgtgaattaaagatgtgctatataaagatgttatatttgacgatggtgctaattaaagat 19567753  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 9547970 - 9547913
Alignment:
Q  314 atttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    ||||||||||||||||||||||||  |  |||||| |||||||| || ||||||||||    
T  9547970 atttaaagatgtgttatataaagacgtgttatttgtagatgtgtgatttaaagatgtg 9547913  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 358
Target Start/End: Original strand, 3851890 - 3852001
Alignment:
Q  247 atgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgttatataaagattttctat 345  Q
    |||||||||||||||| ||||| |||||| || ||| ||||| ||||||  ||| | | |||| ||| || |||||||||||||| ||||||| |  |||    
T  3851890 atgtgctatttgaagaagtgtgctttaaagatttgtgatatagagatgtgctatataaagatg-tgtcatataaagatgtgttatttaaagatgtgttat 3851988  T
Q  346 ttgaagatgtgtt 358  Q
    |||| ||||||||    
T  3851989 ttgatgatgtgtt 3852001  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 19891769 - 19891733
Alignment:
Q  341 tctatttgaagatgtgttatataaagatgtgatattt 377  Q
    ||||||||||||||||| || ||||||||||||||||    
T  19891769 tctatttgaagatgtgtaatttaaagatgtgatattt 19891733  T

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Target: scaffold0323 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 15588 - 15506
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||| ||||||| |||||||||||||||    
T  15588 gatgtgctatttgaagatgtgtaatttaaagatgtgttatataaagatttgatatttgacgatgatggtatttaaagatgtgt 15506  T

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Target: scaffold0323; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 15596 - 15525
Alignment:
Q  193 tatttgatgacgtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatg 264  Q
    |||||||||| ||| ||||| | ||||||| ||||||| ||||||||||||||||| || ||||||| ||||    
T  15596 tatttgatgatgtgctatttgaagatgtgtaatttaaagatgtgttatataaagatttgatatttgacgatg 15525  T

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Target: scaffold0323; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 15581 - 15507
Alignment:
Q  297 tatttgatgatgatgttatttaaagatgtgttatataaagattttctatttgaagatg-tgttatataaagatgtg 371  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||  ||||||| |||| || ||| ||||||||||    
T  15581 tatttgaagatg-tgtaatttaaagatgtgttatataaagatttgatatttgacgatgatggtatttaaagatgtg 15507  T

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Target: scaffold0323; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 15565 - 15529
Alignment:
Q  344 atttgaagatgtgttatataaagatgtgatatttgac 380  Q
    |||| |||||||||||||||||||| |||||||||||    
T  15565 atttaaagatgtgttatataaagatttgatatttgac 15529  T

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Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 109118 - 109053
Alignment:
Q  315 tttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatttgac 380  Q
    ||||||||||||||||||||| |||| |||||||||||||||| || ||||||||| | |||||||    
T  109118 tttaaagatgtgttatataaatatttgctatttgaagatgtgtgatttaaagatgtcaaatttgac 109053  T

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Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 109139 - 109068
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa 275  Q
    ||||||||| |  ||||||  |||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  109139 gtgttatttgataatgtgtattttaaagatgtgttatataaatatttgctatttgaagatgtgtgatttaaa 109068  T

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Target: scaffold0024; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 107008 - 106961
Alignment:
Q  315 tttaaagatgtgttatataaagattttctatttgaagatgtgttatat 362  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  107008 tttaaagatgtgttatataaatatttgctatttgaagatgtgtgatat 106961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 107029 - 106963
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtgtgat 270  Q
    ||||||||| |  ||||||  |||||| |||||||||||||| || |||||||||||||||||||||    
T  107029 gtgttatttgataatgtgtattttaaagatgtgttatataaatatttgctatttgaagatgtgtgat 106963  T

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Target: scaffold0498 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 10052 - 10001
Alignment:
Q  224 atttaaatatgtgttatataaagatgtgctatttgaagatgtgtgatttaaa 275  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  10052 atttaaagatgtgttatataaagatgtgttatttaaagatgtgtgatttaaa 10001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 10061 - 9990
Alignment:
Q  305 gatgatgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtgatatt 376  Q
    |||||||  ||||||||||||||||||||||||| |  ||||| ||||||||| || |||||||||| ||||    
T  10061 gatgatgcaatttaaagatgtgttatataaagatgtgttatttaaagatgtgtgatttaaagatgtgctatt 9990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 10042 - 9954
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaagatgtgctatttgaagatgtg-tgatttaaaatgtgttatataaagatgt 294  Q
    ||||||| ||| ||||||| ||||||| |||||| || |||||||||||||||   |||| || |||| | |||||||||||| ||||||||    
T  10042 gtgttatataaagatgtgttatttaaagatgtgtgatttaaagatgtgctatt---agatttgttgatatgaaatgtgttatacaaagatgt 9954  T

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Target: scaffold0139 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 22718 - 22674
Alignment:
Q  246 gatgtgctatttgaagatgtgtgatttaaa-atgtgttatataaa 289  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  22718 gatgtgttatttgaagatgtgtgatttaaagatgtgttatataaa 22674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 22715 - 22674
Alignment:
Q  204 gtgttatttaaggatgtgtgatttaaatatgtgttatataaa 245  Q
    ||||||||| | ||||||||||||||| ||||||||||||||    
T  22715 gtgttatttgaagatgtgtgatttaaagatgtgttatataaa 22674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 223 - 284
Alignment:
Q  310 tgttatttaaagatgtgttatataaagattttctatttgaagatgtgttatataaagatgtg 371  Q
    |||||| || ||||||||||||| ||||| |  |||||| ||||||| ||||||||||||||    
T  223 tgttatatatagatgtgttatatgaagatgtgatatttgtagatgtgctatataaagatgtg 284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 172379 - 172423
Alignment:
Q  283 atataaagatgtaatatttgatgatgatgttatttaaagatgtgt 327  Q
    |||||||||||| |||||| | ||||||| |||||||||||||||    
T  172379 atataaagatgtgatattttacgatgatgctatttaaagatgtgt 172423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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