View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16745_high_12 (Length: 262)

Name: NF16745_high_12
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16745_high_12
NF16745_high_12
[»] chr4 (44 HSPs)
chr4 (16-253)||(27563160-27563397)
chr4 (23-253)||(27585777-27586011)
chr4 (154-253)||(27412753-27412852)
chr4 (154-250)||(27420500-27420596)
chr4 (160-253)||(27506787-27506880)
chr4 (154-250)||(27475531-27475627)
chr4 (154-250)||(27504014-27504110)
chr4 (163-250)||(27524616-27524703)
chr4 (155-253)||(27478836-27478934)
chr4 (165-250)||(27415713-27415798)
chr4 (154-250)||(27425904-27426000)
chr4 (192-254)||(27559230-27559292)
chr4 (157-250)||(27497277-27497370)
chr4 (165-250)||(27570012-27570097)
chr4 (154-250)||(27468279-27468375)
chr4 (168-253)||(27485909-27485994)
chr4 (154-250)||(27508944-27509040)
chr4 (154-242)||(27565903-27565991)
chr4 (154-250)||(27423314-27423410)
chr4 (154-250)||(27514983-27515079)
chr4 (163-250)||(27490052-27490139)
chr4 (203-254)||(27571711-27571762)
chr4 (192-254)||(27419061-27419123)
chr4 (192-254)||(27567343-27567405)
chr4 (193-250)||(17970391-17970448)
chr4 (193-254)||(27414295-27414356)
chr4 (202-254)||(27411456-27411508)
chr4 (192-254)||(27556369-27556431)
chr4 (173-250)||(27527253-27527326)
chr4 (202-253)||(27495625-27495676)
chr4 (193-254)||(27446235-27446296)
chr4 (192-253)||(27600642-27600703)
chr4 (194-242)||(27421923-27421971)
chr4 (202-241)||(27444794-27444833)
chr4 (202-253)||(27500338-27500389)
chr4 (202-244)||(27460576-27460618)
chr4 (202-244)||(27466919-27466961)
chr4 (202-244)||(27479999-27480041)
chr4 (204-250)||(27507815-27507861)
chr4 (203-244)||(27473990-27474031)
chr4 (202-239)||(27513776-27513813)
chr4 (167-239)||(27437237-27437309)
chr4 (203-239)||(27498518-27498554)
chr4 (204-244)||(27554407-27554447)
[»] chr5 (2 HSPs)
chr5 (154-253)||(1756709-1756808)
chr5 (157-250)||(1754780-1754873)
[»] chr3 (11 HSPs)
chr3 (157-250)||(50910052-50910145)
chr3 (193-249)||(48840703-48840759)
chr3 (193-250)||(55084878-55084935)
chr3 (196-250)||(38043995-38044049)
chr3 (195-250)||(38024868-38024923)
chr3 (195-250)||(38028759-38028814)
chr3 (195-250)||(38031320-38031375)
chr3 (196-250)||(50911863-50911917)
chr3 (195-250)||(38040074-38040129)
chr3 (202-241)||(50904792-50904831)
chr3 (201-250)||(38036792-38036841)
[»] chr2 (1 HSPs)
chr2 (193-250)||(3073661-3073718)
[»] chr8 (3 HSPs)
chr8 (193-250)||(21634635-21634692)
chr8 (194-250)||(21607288-21607344)
chr8 (195-250)||(21604747-21604802)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 27563160 - 27563397
Alignment:
Q  16 cacataattgtcatatagtaatttgttttctcatttcattggaaaagggatctttacaattcgatatggttcctaatgtaaaaaatgtctcaactaatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27563160 cacataattgtcatatagtaatttgttttctcatttcattggaaaagggatctttacaattcgatatggttcctaatttaaaaaatgtctcaactaatct 27563259  T
Q  116 atatgtcagtttcctacaatcttacattcatgtaatatttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27563260 atatgtcagtttcctacaatcttacattcatgtaatatttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtg 27563359  T
Q  216 aggccacccattggatgatcatatccaaactcttcttc 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27563360 aggccacccattggatgatcatatccaaactcttcttc 27563397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 27586011 - 27585777
Alignment:
Q  23 ttgtcatatagtaatttgttttctcatttcattggaaaaggg-atctttacaattcgatatg----gttcctaatgtaaaaaatgtctcaactaatctat 117  Q
    ||||||||||||||||  |||||||||||||||||| ||||| |||||||||||| |||||     ||||||||||| ||||||||||||||||||||||    
T  27586011 ttgtcatatagtaatta-ttttctcatttcattggataaggggatctttacaatttgatatatatagttcctaatgtgaaaaatgtctcaactaatctat 27585913  T
Q  118 atgtcagtttcctacaatcttacattcatgtaatatttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgag 217  Q
    |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||| ||||||||||||  ||||||||||| ||||||||||| |||||    
T  27585912 atgtcagtttcctacaatcttatattcatgtcatatttcaaatctcattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgag 27585813  T
Q  218 gccacccattggatgatcatatccaaactcttcttc 253  Q
     || ||||||||||||||||||||||||||||||||    
T  27585812 acctcccattggatgatcatatccaaactcttcttc 27585777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 27412852 - 27412753
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    |||||||| ||||| ||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27412852 ttcatagcccattcgagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttc 27412753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 27420596 - 27420500
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||| |||| |||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  27420596 ttcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 27506880 - 27506787
Alignment:
Q  160 gctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  27506880 gctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttc 27506787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 27475531 - 27475627
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||| ||||||||| ||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  27475531 ttcatagcccattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27475627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 27504110 - 27504014
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||  ||||||||| ||||||||| ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27504110 ttcatagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttc 27504014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 27524703 - 27524616
Alignment:
Q  163 cattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||||  |||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  27524703 cattcaagcatgaagttatatgttggaagacatcttcggtgcacggaatggtgaggccacccattggatgatcatatccaaactcttc 27524616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 27478836 - 27478934
Alignment:
Q  155 tcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    ||||||| ||||||||| ||||||||||||||| ||  ||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27478836 tcatagcccattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttc 27478934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 27415798 - 27415713
Alignment:
Q  165 ttcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||||||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  27415798 ttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttc 27415713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 27426000 - 27425904
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||  ||||||||||||| || |||||||||||  |||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  27426000 ttcataggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27425904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 27559230 - 27559292
Alignment:
Q  192 gcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27559230 gcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttct 27559292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 27497277 - 27497370
Alignment:
Q  157 atagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| |||||||||||||||||||  |||| ||| ||| ||||||||||||||| |||||||||||  | |||||||||||||||||||||||    
T  27497277 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttc 27497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 27570012 - 27570097
Alignment:
Q  165 ttcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||| |||||| |||||||||||||||  |||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  27570012 ttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttc 27570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 27468279 - 27468375
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||  ||||||||  |||| |||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  27468279 ttcatagtccattcaaggaagaaattatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttc 27468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 27485909 - 27485994
Alignment:
Q  168 aagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    |||| ||||||||  ||||||||| |  |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27485909 aagcaagaagttacgtgttgaaagacgccttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttc 27485994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 27509040 - 27508944
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||  |||| |||| ||||||||||||||| ||  ||||||| | ||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  27509040 ttcatagtccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttc 27508944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 27565903 - 27565991
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatcca 242  Q
    |||||||  ||||||||| ||||||||||||||| ||| |||||||    |||||||| ||||||||||||||||||||||||||||||    
T  27565903 ttcatagtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatcca 27565991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 27423410 - 27423314
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||  |||||||| |||||||||||||||| ||  ||||||| ||||||||||  |||||||||||||| |||||||  || |||||||||||    
T  27423410 ttcatagtccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttc 27423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 27515079 - 27514983
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||  ||||||||  |||| ||||||| || ||| ||||||| || |||||||| |||||||||||||| ||||||||||||||||| |||||    
T  27515079 ttcatagtccattcaaggaagaaattatatgctggaagacatcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttc 27514983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 27490139 - 27490052
Alignment:
Q  163 cattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||| ||||||||| |||| | ||| ||| |||||||  ||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  27490139 cattaaagcgagaaattatgtattggaagtcatcttcgttgacaggaatggtgaggccacccattggatgatcatatccaaactcttc 27490052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 27571762 - 27571711
Alignment:
Q  203 gcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttct 27571711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 27419061 - 27419123
Alignment:
Q  192 gcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    |||||||||  |||||||||||| || |||||||||||||||||||||||||| |||||||||    
T  27419061 gcatcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttct 27419123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 27567405 - 27567343
Alignment:
Q  192 gcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  27567405 gcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttct 27567343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 17970448 - 17970391
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  17970448 catcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttc 17970391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 27414295 - 27414356
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    |||||||| |||| |||||||| || |||||||||||||||||||||||||| |||||||||    
T  27414295 catcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttct 27414356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 27411456 - 27411508
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttct 27411508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 27556369 - 27556431
Alignment:
Q  192 gcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    ||||||||| |||| ||||||||||| |||||||| | ||||||||||||||| |||||||||    
T  27556369 gcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttct 27556431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 27527326 - 27527253
Alignment:
Q  173 agaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||||||||||| ||| |||||||| |||||||||||| ||     ||||| |||||||||||||||||||||||    
T  27527326 agaagttatatgttggaagacatcttcactgcaaggaattggga----tcccatgggatgatcatatccaaactcttc 27527253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 27495676 - 27495625
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    |||||||||| ||||| |||||||||||||||| | ||||||||||||||||    
T  27495676 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 27495625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 27446296 - 27446235
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttct 254  Q
    |||||||| |||||||||| | ||| ||| ||||| ||||||||||| ||||||||||||||    
T  27446296 catcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttct 27446235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 27600703 - 27600642
Alignment:
Q  192 gcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    ||||||||  |||||||||||||||| ||||||||||||||||  || ||||| ||||||||    
T  27600703 gcatcttctttgcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 27421923 - 27421971
Alignment:
Q  194 atcttcagtgcaaggaattgtgaggccacccattggatgatcatatcca 242  Q
    ||||||| |||||||||||||||| |||||| |||||||||| ||||||    
T  27421923 atcttcactgcaaggaattgtgagaccacccgttggatgatcgtatcca 27421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 27444794 - 27444833
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatcc 241  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  27444794 tgcaaggaattgtgagaccacccattggatggtcatatcc 27444833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 27500338 - 27500389
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    |||||||||| |||| ||||||||||||||| |||||||| |||| ||||||    
T  27500338 tgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttc 27500389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 27460618 - 27460576
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatccaaa 244  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  27460618 tgcaaggaatggtgagaccacccattggatgatcatattcaaa 27460576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 27466961 - 27466919
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatccaaa 244  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  27466961 tgcaaggaatagtgagaccacccattggatgatcatattcaaa 27466919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 27480041 - 27479999
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatccaaa 244  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  27480041 tgcaaggaatggtgagaccacccattggatgatcatattcaaa 27479999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 27507815 - 27507861
Alignment:
Q  204 caaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||||||| || |||||||||||||| ||||||||||| |||||    
T  27507815 caaggaattgtaagaccacccattggatggtcatatccaaattcttc 27507861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 27474031 - 27473990
Alignment:
Q  203 gcaaggaattgtgaggccacccattggatgatcatatccaaa 244  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||    
T  27474031 gcaaggaatggtgagaccacccattggatgatcatattcaaa 27473990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 27513776 - 27513813
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatat 239  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  27513776 tgcaaggaatagtgagaccacccattggatgatcatat 27513813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 27437309 - 27437237
Alignment:
Q  167 caagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatat 239  Q
    |||||||||  |||| || || ||| ||||||| ||||||||||| |  |||||| |||||||||||||||||    
T  27437309 caagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattggatgatcatat 27437237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 27498554 - 27498518
Alignment:
Q  203 gcaaggaattgtgaggccacccattggatgatcatat 239  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatcatat 27498518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 27554447 - 27554407
Alignment:
Q  204 caaggaattgtgaggccacccattggatgatcatatccaaa 244  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaa 27554407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 1756709 - 1756808
Alignment:
Q  154 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 253  Q
    |||||||| ||||||||| ||| || |||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  1756709 ttcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttc 1756808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 1754873 - 1754780
Alignment:
Q  157 atagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| |||| |||| ||||||||||| ||  ||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  1754873 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttc 1754780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 50910145 - 50910052
Alignment:
Q  157 atagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||||| ||||||||||| || ||    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50910145 atagctcattgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttc 50910052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 48840703 - 48840759
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactctt 249  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48840703 catcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 55084935 - 55084878
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  55084935 catcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttc 55084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 38044049 - 38043995
Alignment:
Q  196 cttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  38044049 cttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttc 38043995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 38024868 - 38024923
Alignment:
Q  195 tcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttc 38024923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 38028759 - 38028814
Alignment:
Q  195 tcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  38028759 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttc 38028814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 38031320 - 38031375
Alignment:
Q  195 tcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttc 38031375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 50911863 - 50911917
Alignment:
Q  196 cttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttc 50911917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 38040074 - 38040129
Alignment:
Q  195 tcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  38040074 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttc 38040129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 50904792 - 50904831
Alignment:
Q  202 tgcaaggaattgtgaggccacccattggatgatcatatcc 241  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  50904792 tgcaaggaatggtgaggccacccattggatgatcatatcc 50904831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 38036792 - 38036841
Alignment:
Q  201 gtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  38036792 gtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttc 38036841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 3073718 - 3073661
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  3073718 catcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttc 3073661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 21634692 - 21634635
Alignment:
Q  193 catcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||    
T  21634692 catcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttc 21634635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 21607288 - 21607344
Alignment:
Q  194 atcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    |||||| ||||||||||  ||||||||||||||||| |||||||||||||| |||||    
T  21607288 atcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttc 21607344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 21604747 - 21604802
Alignment:
Q  195 tcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttc 250  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  21604747 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttc 21604802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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