View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_high_16 (Length: 210)
Name: NF16745_high_16
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 19848724 - 19848904
Alignment:
| Q |
13 |
aataaaatcatagaaaagacagtgaaatatgactagataccttgctaaaaattgtttacaatacctccagagttatcaaaccaattaattataatttatc |
112 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19848724 |
aataatatcatagaaaagacagtgaaacatgactagataccttcctaaaaattgtttacaatacctccagagttatcaaaccaattaattataatttatc |
19848823 |
T |
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| Q |
113 |
ttttgacaaattaatcataatctctcaatcaaatagagaacaagtttcctatatttcattaagttatacacttatatatag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19848824 |
ttttgacaaattaatcataatctctcaatcaaatagagaacaagtttcctatattttattaagttatacacttatatatag |
19848904 |
T |
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Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 45506153 - 45505973
Alignment:
| Q |
13 |
aataaaatcatagaaaagacagtgaaatatgactagataccttgctaaaaattgtttacaatacctccagagttatcaaaccaattaattataatttatc |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45506153 |
aataatatcatagaaaagacagtgaaatatgactagataccttcctaaaaattctttacaatacatccagagttatcaaaccaattaattataatttatc |
45506054 |
T |
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| Q |
113 |
ttttgacaaattaatcataatctctcaatcaaatagagaacaagtttcctatatttcattaagttatacacttatatatag |
193 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45506053 |
ttttgacaaattaattataatctctcaatcaaatagagaacaagtttcctatattttattaagttatacacttatatatag |
45505973 |
T |
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