View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_high_3 (Length: 493)
Name: NF16745_high_3
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Complemental strand, 4601449 - 4600986
Alignment:
| Q |
20 |
atggacagggataataatttgaaaaattgatagtggttgaatgaaggaatgcatgcagactagcggttgatggacggcatat----ccggtgtccgactc |
115 |
Q |
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| T |
4601449 |
atggacagggataataatttgaaaaattgatagtggttgaatgaaggaatgcatgcagactagcggttgatggacggcatatatatccggtgtccgactc |
4601350 |
T |
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| Q |
116 |
atatgattatactattctattggttgagattaaaacagattctactaaatcatgcaggccatgtaaatttaacgagaatcatatgaatttcaatgaataa |
215 |
Q |
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| T |
4601349 |
atatgattatactattctattggttgagattaaaacagattctactaaatcatgcaggccatgtaaatttaacgagaatcatatgaatttcaatgaataa |
4601250 |
T |
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| Q |
216 |
aatagtttgttaatgacatatttggattgaatgtagctgcacatgttagtttcttgctctacactgacacatgtgtgacaccaccaaatacacattaaac |
315 |
Q |
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| T |
4601249 |
aatagtttgttaatgacatatttggattgaatgtagctgcacatgttagtttcttgttctacactgacacatgtgtgacaccaccaaatacacattaaac |
4601150 |
T |
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| Q |
316 |
atgaagtgttggtgctcagtaactcacgtttctttagaggcacaaaaggttaaaaatttagttttgacccttgtgggtttgataagcgtgctttgtttgc |
415 |
Q |
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| T |
4601149 |
atgaagtgttg-------gtaactcacgtttctttagaggcacaaaaggttaaaaatttagttttgacccttgtgggtttgataagcgtgctttgtttgc |
4601057 |
T |
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| Q |
416 |
atatattgcatgttagtgttacaaaaagactaattatttgtcatttggtggggttggttgttaatgatgat |
486 |
Q |
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| T |
4601056 |
atatattgcatgttagtgttacaaaaagactaattatttgtcatttggtgtggttggttgttaatgatgat |
4600986 |
T |
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