View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_high_5 (Length: 381)
Name: NF16745_high_5
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 32882770 - 32882428
Alignment:
| Q |
17 |
aaggtttacgacgatgttgatagggataagaattacgattgcgattgatccttcgaatagattcatcgccgataactttggagcctttttcagtttcatg |
116 |
Q |
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| T |
32882770 |
aaggtttacgacgatgttgatagggataagaattacgattgcgattgatccttcgaatagattcatcgccgataactttggagcctttttcagtttcatg |
32882671 |
T |
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| Q |
117 |
attaacgataattttatcaggtccatgaatcttgtagtaagagagaactccatcttgaagaacaaaccatcgaggtctccatcctttaccgtaattcacc |
216 |
Q |
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| T |
32882670 |
attaacgataattttatcaggtccatgaatcttgtagtaagagagaactccatcttgaagaacaaaccatcgaggtctccatcctttaccgtaattcacc |
32882571 |
T |
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| Q |
217 |
catttatacagtataccggagatgccatttccgacgaggtcgttgatcttcaaatcaacaaccaccgccggctgttcccgctgacaaccgttgctatggc |
316 |
Q |
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| T |
32882570 |
catttatacagtataccggagattccatttccgacgaggtcgttgatcttcaaatcaacaaccaccgccggctgttcccgctgacaaccgttgctatggc |
32882471 |
T |
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| Q |
317 |
tgtgactatgaatcggagccgccgaatcggatctaacagcgac |
359 |
Q |
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| T |
32882470 |
tgtgactatgaatcggagccggcgaatcggatctaacagcgac |
32882428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 264
Target Start/End: Complemental strand, 24479162 - 24478974
Alignment:
| Q |
76 |
gattcatcgccgataactttggagcctttttcagtttcatgattaacgataattttatcaggtccatgaatcttgtagtaagagagaactccatcttgaa |
175 |
Q |
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||||||||||| ||||| ||| | ||||| ||||||||| |||| | | ||| ||||||||||||||||||||||| ||||| ||||| |||||||| | |
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| T |
24479162 |
gattcatcgccaataaccttgaatcctttctcagtttcaggattgattacaatcttatcaggtccatgaatcttgtaataagaaagaacaccatcttgca |
24479063 |
T |
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| Q |
176 |
gaacaaaccatcgaggtctccatcctttaccgtaattcacccatttatacagtataccggagatgccatttccgacgaggtcgttgatc |
264 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| | ||||| || || || ||||| || ||||||||||||||| |
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| T |
24479062 |
acacaaaccatcgatgcctccatcctttaccgtaattcacccatttctgaagtattccagatattccattcccaacgaggtcgttgatc |
24478974 |
T |
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