View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_low_1 (Length: 664)
Name: NF16745_low_1
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 3134451 - 3134807
Alignment:
| Q |
11 |
caaaggaatcctagactgaagaatctctacacatgacacgtctttcgccggtgttatatcatcgtcggccgtcaatgccggcggaggtggtgaagatttc |
110 |
Q |
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| T |
3134451 |
caaaggaatcctagactgaagaatctctacacatgacacgtctttcgccggtgttatatcatcgtcggccgtcaatgccggcggaggtggtgaagatttc |
3134550 |
T |
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| Q |
111 |
tcgacttcctttgatgacttcacccatccgcccaccaccactctttgtcctataaactccgaaccgccgtcggttcggtctagaaaaagtgtttttaatt |
210 |
Q |
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| T |
3134551 |
tcgacttcctttgatgacttcacccatccgcccaccaccactctttgtcctataaactccgaaccgccgtcggttcggtctagaaaaagtgtttttaatt |
3134650 |
T |
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| Q |
211 |
gaacccggttggagtatttaaaaggagttaaaagactcaagtgttgagaattgggttcaactgaaccgggttcttgggtttgagttttggtttggttttc |
310 |
Q |
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| T |
3134651 |
gaacccggttggagtatttaaaaggagttaaaagactcaagtgttgagaattgggttcaactgaaccgggttcttgggtttgagttttggtttggttttc |
3134750 |
T |
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| Q |
311 |
ttttgccatgttttgaaccgaatattataattaaaagtgagagagagaaaaaagtac |
367 |
Q |
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| T |
3134751 |
ttttgccatgttttgaaccgaatattataattaaaagtgagagagagaaaaaagtac |
3134807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 396 - 651
Target Start/End: Original strand, 3134836 - 3135097
Alignment:
| Q |
396 |
gaagagaattgaagaggaacatgtttgtgtccgtgtaatatatacaacagtggaagaagagaagagaaagatgctttgcttggaatgagaaaatgaagat |
495 |
Q |
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| T |
3134836 |
gaagagaattgaagaggaacatgtttgtgtccgtgtaatatatacaacagtggaagaagagaagagaaagatgctttgcttggaatgagaaaatgaagat |
3134935 |
T |
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| Q |
496 |
tggaggagaaggtaagggattgtttgggagtttcttctggattttga------ttttttggattaataaagagaagagaaataatgataattaagaggta |
589 |
Q |
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| T |
3134936 |
tggaggagaaggtaagggattgtttgggagtttcttctggattttgattttttttttttggattaataaagagaagagaaataatgataattaagaggta |
3135035 |
T |
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| Q |
590 |
ttatgttgggtttggtattcttttgttttaggtaattattacttgcttctattgtatctgtg |
651 |
Q |
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| T |
3135036 |
ttatgttgggtttggtattcttttgttttaggtaattattacttgcttctattgtatttgtg |
3135097 |
T |
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