View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_low_10 (Length: 314)
Name: NF16745_low_10
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 42307743 - 42307445
Alignment:
| Q |
16 |
cacatgctaggatctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307743 |
cacatgctaggatctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatt |
42307644 |
T |
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| Q |
116 |
tgttgaaaaaagtaatttaattcctttttgcatcatatgcttaattttacaatgttaaacatatatatgaattgtgtataggttttatactagagtatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307643 |
tgttgaaaaaagtaatttaattcctttttgcatcatatgcataattttacaatgttaaacatatatatgaattgtgtataggttttatactagagtatat |
42307544 |
T |
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| Q |
216 |
catggttaaatattagtcagttaagcagtcatctattgtgattgtgatatgattcaatactgcatttgtgtttataactggtgcaaatttacatgcttc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307543 |
catggttaaatattagtcagttaagcagtcatctattgtgattgtgatatgattcaatactgcatttgtgtttataactggtgcaaatttacatgcttc |
42307445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 51570585 - 51570711
Alignment:
| Q |
16 |
cacatgctaggatctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatt |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| | |
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| T |
51570585 |
cacatgctaggatctgttccattatcaggaaatctggtaaagacatagaagaactaaaaaaggtaagcttttctaatttc--tg-tgatgacattagaat |
51570681 |
T |
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| Q |
116 |
tgttgaaaaaagtaatttaattcctttttg |
145 |
Q |
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| T |
51570682 |
tattggaaaagttaatttaattgctttttg |
51570711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 47972424 - 47972330
Alignment:
| Q |
16 |
cacatgctaggatctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacatta |
111 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||| |
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| T |
47972424 |
cacatgctaggatctgttccattatcaggaaatctggtaaagacatagaagaactaaaaaaggtaa-ctgttctaatttctgtgatgatgatatta |
47972330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 34033278 - 34033347
Alignment:
| Q |
16 |
cacatgctaggatctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagttt |
85 |
Q |
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||||||||||||| ||||| || ||| |||||| ||||||||||| |||||| |||| ||||||||||| |
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| T |
34033278 |
cacatgctaggatttgttctatcatcaggaaatcgggtaaagacattgaagaagtaaagaaggtaagttt |
34033347 |
T |
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