View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16745_low_11 (Length: 287)

Name: NF16745_low_11
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16745_low_11
NF16745_low_11
[»] chr5 (2 HSPs)
chr5 (14-252)||(25382852-25383090)
chr5 (239-278)||(25383109-25383148)
[»] chr6 (4 HSPs)
chr6 (16-252)||(10123322-10123558)
chr6 (16-252)||(19306734-19306986)
chr6 (239-278)||(19306676-19306715)
chr6 (239-278)||(10123264-10123303)
[»] chr1 (6 HSPs)
chr1 (16-252)||(28245078-28245331)
chr1 (16-156)||(11474799-11474939)
chr1 (16-156)||(11502839-11502979)
chr1 (110-152)||(11474970-11475012)
chr1 (110-152)||(11503010-11503052)
chr1 (239-278)||(28245020-28245059)
[»] chr7 (2 HSPs)
chr7 (14-249)||(22490323-22490574)
chr7 (237-278)||(22490263-22490304)
[»] chr4 (2 HSPs)
chr4 (16-210)||(48795430-48795628)
chr4 (239-278)||(44574437-44574476)
[»] chr2 (4 HSPs)
chr2 (16-156)||(38252027-38252167)
chr2 (16-156)||(43157375-43157515)
chr2 (110-152)||(38251954-38251996)
chr2 (110-152)||(43157546-43157588)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 25382852 - 25383090
Alignment:
Q  14 cattttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaat 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25382852 cattttttcctgctgaattatagcagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaat 25382951  T
Q  114 tgtgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgcttattgaattgtttcaattgcacatccatattgaattaaatatttac 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  25382952 tgtgttatagcagcctctgtcatttgttcgattctatttatgcattttttcgcttattgagttgtttcaattgcacatccatattgaattaaatattaac 25383051  T
Q  214 aattatattgagttgtttcataatacatgtacattgtgt 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25383052 aattatattgagttgtttcataatacatgtacattgtgt 25383090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 25383109 - 25383148
Alignment:
Q  239 catgtacattgtgttgtcaacaactttctctgcttcatct 278  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25383109 catgtacattgtgttgtcaacaactttctctgcttcatct 25383148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 10123558 - 10123322
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  10123558 ttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattgactttgtattttgaatgcaatatacaatattttgttagcctaattg 10123459  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgcttattgaattgtttcaattgcacatccatattgaattaaatatttacaa 215  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  10123458 tgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttattgagttgtttcaattgcacatccatattgaattaaatattaacaa 10123359  T
Q  216 ttatattgagttgtttcataatacatgtacattgtgt 252  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10123358 ttatattgagttgttttataatacatgtacattgtgt 10123322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 19306986 - 19306734
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19306986 ttttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 19306887  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgc----------------ttattgaattgtttcaattgcacatccatattg 199  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||                ||||| | |||||||||||||||||||||||||    
T  19306886 tgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattaagttgtttcaattgcacatccatattg 19306787  T
Q  200 aattaaatatttacaattatattgagttgtttcataatacatgtacattgtgt 252  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  19306786 aattaaatattaacaattatattgagttgttttataatacatgtacattgtgt 19306734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 19306715 - 19306676
Alignment:
Q  239 catgtacattgtgttgtcaacaactttctctgcttcatct 278  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19306715 catgtacattgtgttgtcaacaactttctctgcttcatct 19306676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 10123303 - 10123264
Alignment:
Q  239 catgtacattgtgttgtcaacaactttctctgcttcatct 278  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  10123303 catgtacattgtgttgtcaacaactttctctgtttcatct 10123264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 28245331 - 28245078
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28245331 ttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgttagcctaattg 28245232  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctattt-----------------atgcattttttcgcttattgaattgtttcaattgcacatccatatt 198  Q
    |||||||||||||||||||||||||| ||||||||||                 ||||||||||||||||||||| ||||||||||||||||||||||||    
T  28245231 tgttatagcagcctctgtcatttgtttgtttctatttatgcgtttttttcgcttatgcattttttcgcttattgagttgtttcaattgcacatccatatt 28245132  T
Q  199 gaattaaatatttacaattatattgagttgtttcataatacatgtacattgtgt 252  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  28245131 gaattaaatattaacaattatattgagttgttttataatacatgtacattgtgt 28245078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 11474799 - 11474939
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11474799 ttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattg 11474898  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctatttatgc 156  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11474899 tgttatagcagcctctgtcatttgttcgtttctatttatgc 11474939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 11502839 - 11502979
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11502839 ttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattg 11502938  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctatttatgc 156  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11502939 tgttatagcagcctctgtcatttgttcgtttctatttatgc 11502979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 11474970 - 11475012
Alignment:
Q  110 taattgtgttatagcagcctctgtcatttgttcgtttctattt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11474970 taattgtgttatagcagcctctgtcatttgttcgtttctattt 11475012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 11503010 - 11503052
Alignment:
Q  110 taattgtgttatagcagcctctgtcatttgttcgtttctattt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11503010 taattgtgttatagcagcctctgtcatttgttcgtttctattt 11503052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 28245059 - 28245020
Alignment:
Q  239 catgtacattgtgttgtcaacaactttctctgcttcatct 278  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  28245059 catgtacattgtgttgtcaacaactttctctgtttcatct 28245020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 22490574 - 22490323
Alignment:
Q  14 cattttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaat 113  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22490574 cattttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaat 22490475  T
Q  114 tgtgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgc----------------ttattgaattgtttcaattgcacatccatat 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||                ||||||| |||||||||||||||||| ||||    
T  22490474 tgtgttatagcagcctctgtcatttgttcgtttgtatttatgagttttttcgcttatgcattttttcgcttattgagttgtttcaattgcacatcaatat 22490375  T
Q  198 tgaattaaatatttacaattatattgagttgtttcataatacatgtacattg 249  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22490374 tgaattgaatattaacaattatattgagttgtttcataatacatgtacattg 22490323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 22490304 - 22490263
Alignment:
Q  237 tacatgtacattgtgttgtcaacaactttctctgcttcatct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22490304 tacatgtacattgtgttgtcaacaactttctctgcttcatct 22490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 48795430 - 48795628
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgtt---atagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaa 112  Q
    ||||||||| ||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48795430 ttttttcctactgaattatagcagtagtgttgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattgtgctagcctaa 48795529  T
Q  113 ttgtgttatagcagcctctgtcatttgttcgtttctatttatg-cattttttcgcttattgaattgtttcaattgcacatccatattgaattaaatatt 210  Q
    |||||||||| || |||||||||||||||||||||||||||||   |||||| |||| |||| |||||||||||||||||| |||||||||| ||||||    
T  48795530 ttgtgttataacaacctctgtcatttgttcgtttctatttatgtgttttttttgcttgttgagttgtttcaattgcacatcaatattgaattgaatatt 48795628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 44574476 - 44574437
Alignment:
Q  239 catgtacattgtgttgtcaacaactttctctgcttcatct 278  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  44574476 catgtacattgtgttgtcaacaactttctctgtttcatct 44574437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 38252167 - 38252027
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38252167 ttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattg 38252068  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctatttatgc 156  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38252067 tgttatagcagcctctgtcatttgttcgtttctatttatgc 38252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 43157375 - 43157515
Alignment:
Q  16 ttttttcctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattg 115  Q
    ||||||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43157375 ttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattg 43157474  T
Q  116 tgttatagcagcctctgtcatttgttcgtttctatttatgc 156  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43157475 tgttatagcagcctctgtcatttgttcgtttctatttatgc 43157515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 38251996 - 38251954
Alignment:
Q  110 taattgtgttatagcagcctctgtcatttgttcgtttctattt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38251996 taattgtgttatagcagcctctgtcatttgttcgtttctattt 38251954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 43157546 - 43157588
Alignment:
Q  110 taattgtgttatagcagcctctgtcatttgttcgtttctattt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43157546 taattgtgttatagcagcctctgtcatttgttcgtttctattt 43157588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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