View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_low_15 (Length: 212)
Name: NF16745_low_15
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 11622012 - 11621828
Alignment:
| Q |
13 |
agcataggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaatatctctgataaatca |
112 |
Q |
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| T |
11622012 |
agcataggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaatatctctgataaatca |
11621913 |
T |
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| Q |
113 |
acatgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtataaatatagttctaatt |
197 |
Q |
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| T |
11621912 |
acatgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtatgaatatagttctaatt |
11621828 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 11640491 - 11640309
Alignment:
| Q |
17 |
taggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaa--tatctctgataaatcaac |
114 |
Q |
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| T |
11640491 |
taggtgttcattatcagcgactctctgaattttaggagtactgttgagagactattatcaatgaaatcaggtatttttaaaatatctttgataaatcaac |
11640392 |
T |
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| Q |
115 |
atgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtataaatatagttctaatt |
197 |
Q |
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| T |
11640391 |
acgccgtagatcctaaggttgttgatatgcatgttcatatatttatttgacttccacactaaagtatgattatagttttaatt |
11640309 |
T |
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