View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16745_low_17 (Length: 207)
Name: NF16745_low_17
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_17 |
 | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold1870 (1 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 29272418 - 29272234
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29272418 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttttaagagaaaacactgtgagtaagattgatatcta |
29272319 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttctcactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
29272318 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttattttcactc |
29272234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 27609700 - 27609516
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27609700 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta |
27609601 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttctcactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27609600 |
tgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactc |
27609516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 27717079 - 27716895
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27717079 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta |
27716980 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttctcactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| | || |||||||||| |||||| |
|
|
| T |
27716979 |
tgatcattttgttatttagttttaatacaactttgctctttttgaactaaatatgatcatctaaaacgagcatttcttttcactc |
27716895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 27697169 - 27696985
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27697169 |
aagaatcaactaaagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttttaagagaaaacactgtgagtaagattgatatcta |
27697070 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttctcactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27697069 |
tgatcattttgttatttagttttaatacgactttgctctatttgcactaaatatgatcatctgatactagcatttcttttcactc |
27696985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 27704843 - 27704669
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
27704843 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtcttaaaagaaaacactgtgagtaagattgatatcta |
27704744 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
27704743 |
tgatcattttgttatttagttttaatatgactttgctctttttggactaaatatgaccatctcatactagtattt |
27704669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 27680564 - 27680748
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| | || || |||||| ||| |||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
27680564 |
aagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaagaaaacactgtgagtatgattgatatcta |
27680663 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttctcactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27680664 |
tgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactc |
27680748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 27591595 - 27591426
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| | || ||||||||||||| |||||||| ||||||||||||| ||||||||||||| || |
|
|
| T |
27591595 |
aagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaaaagaaaacactgtgcgtaagattgatatcta |
27591496 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactag |
185 |
Q |
| |
|
|| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
27591495 |
tgttcaatttgttatttagttttaatacaactttgctcattttggactaaatatgaccatctcatactag |
27591426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 27603275 - 27603106
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || || || |||||||||| |||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
27603275 |
aagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttctaacagaaaacactgtgagtaagattgatatata |
27603176 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgac-tttgctctttttggactaaatattatcatctgatacta |
184 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
27603175 |
atatcaatttgttatttagttttaatatgacttttggtctttttggactaaatatgatcatctcatacta |
27603106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 28787865 - 28788029
Alignment:
| Q |
26 |
taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||| |||||||| ||||||||| ||||||| ||||||||| |||| ||| ||| |
|
|
| T |
28787865 |
taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt |
28787964 |
T |
|
| Q |
126 |
gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
28787965 |
gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtattt |
28788029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 28793986 - 28794150
Alignment:
| Q |
26 |
taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||| |||||||| ||||||||| ||||||| ||||||||| |||| ||| ||| |
|
|
| T |
28793986 |
taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt |
28794085 |
T |
|
| Q |
126 |
gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
28794086 |
gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtattt |
28794150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 27676194 - 27676020
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| | || ||||||||||||| |||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
27676194 |
aagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaacagaaaacactgtgagtaagattgatatcta |
27676095 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|| ||| ||||||||||||||||||||| | ||||||| ||||||||||||||| | ||||| ||| ||| |||| |
|
|
| T |
27676094 |
tgttcaatttgttatttagttttaatacaattttgctcattttggactaaatatgaccatctcatattagtattt |
27676020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 26624864 - 26625009
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| || |
|
|
| T |
26624864 |
aagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatcta |
26624963 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttgga |
161 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26624964 |
tgatcaatttattatttagttttaatactactttgctctttttgga |
26625009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 26648072 - 26648209
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
26648072 |
aagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatcta |
26648171 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctc |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26648172 |
tgatcaatttgttatttagttttaatacgactttgctc |
26648209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 26730841 - 26730986
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| || |
|
|
| T |
26730841 |
aagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatcta |
26730940 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttgga |
161 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26730941 |
tgatcaatttattatttagttttaatactactttgctctttttgga |
26730986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 26754040 - 26754177
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
26754040 |
aagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatcta |
26754139 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctc |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26754140 |
tgatcaatttgttatttagttttaatacgactttgctc |
26754177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 31286158 - 31286300
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| |||| || || ||||||||||||| || ||||| |||||||||||||||||||||||||| || |
|
|
| T |
31286158 |
aagaatcacctaaagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctttaaatgaaaacactgtgagtaagattgatatcta |
31286257 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctcttttt |
158 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31286258 |
tgttcaatttgttatttagttttaaaacgactttgctcttttt |
31286300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 26804060 - 26804234
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||| |||| | || ||||||||||||| | || || |||||||||| |||| ||| |||||||| |||||||||||||||||| || |
|
|
| T |
26804060 |
aagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagttcatgttataaaagaaaacattgtgagtaagattgatattta |
26804159 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|| ||| ||||||||||||||| |||||||||||| |||| |||||| |||| | ||||| ||||||| |||| |
|
|
| T |
26804160 |
tgttcaatttgttatttagtttagatacgactttgcatttttaggactacatatgaccatctcatactagtattt |
26804234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 26813171 - 26813247
Alignment:
| Q |
36 |
ggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatat |
112 |
Q |
| |
|
|||||| |||||||| |||| || || ||||||||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26813171 |
ggagaacgaagtaggctatggtgtcaagatgatatagttcatgttttaaaagaaaacattgtgagtaagattgatat |
26813247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 26863183 - 26863320
Alignment:
| Q |
26 |
taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt |
125 |
Q |
| |
|
||||||||| || ||| ||||||||||||| || || ||||||||| | | |||||| ||||||||||||||||||||||||||| ||||| || | | |
|
|
| T |
26863183 |
taaagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttttagaagaaaacactgtgagtaagattgatatttatgaacaatct |
26863282 |
T |
|
| Q |
126 |
gttatttagt-tttaatacgactttgctctttttggact |
163 |
Q |
| |
|
|||| ||||| ||||| || ||||||||| |||| |||| |
|
|
| T |
26863283 |
gtta-ttagtctttaacacaactttgctcgttttagact |
26863320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 27426125 - 27426049
Alignment:
| Q |
86 |
agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga |
161 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
27426125 |
agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga |
27426049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 26885684 - 26885751
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta |
83 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||||| || || ||||||||||||| ||||||| |
|
|
| T |
26885684 |
aagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacgatgatatagttcatgtttta |
26885751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 27529838 - 27529741
Alignment:
| Q |
65 |
tgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgtt--atttag-ttttaatacgactttgctctttttg |
159 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||||||||||| || || || |||||| |||||| |||||| | ||| |||||||||||| |
|
|
| T |
27529838 |
tgatatagttcatgttttaaaaaaaaacactgtgagtaagattgatatctaggaacaatttgttaaatttagcttttaacatgacattgctctttttg |
27529741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 27663783 - 27663671
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||| || | || |||||||||| || |||||||| | ||||||| |||||||||||||| || |
|
|
| T |
27663783 |
aagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgatatagctcatgttttaaaacaaaacac----agtaagattgatatcta |
27663688 |
T |
|
| Q |
116 |
tgatcattttgttattt |
132 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
27663687 |
tgaacaatttgttattt |
27663671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 25491887 - 25491785
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| ||| || ||||||||| | |||||||| || || | |||||||| |||| ||||||||||||||||| || |||||||||||||| || |
|
|
| T |
25491887 |
aagaatcacgtaatgatcctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttttaagagaaaacacggtaagtaagattgatatcta |
25491788 |
T |
|
| Q |
116 |
tga |
118 |
Q |
| |
|
||| |
|
|
| T |
25491787 |
tga |
25491785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 26960729 - 26960825
Alignment:
| Q |
18 |
gaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatg |
117 |
Q |
| |
|
||||||||||||||||||||| || | |||||||| || || | ||||||||||||| ||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
26960729 |
gaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtgatgatatagttcatgttttacaagaaaaaa----aagtaagattgatatatatg |
26960824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 2119 - 1957
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2119 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta |
2020 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttg-gactaaatattatcatct |
177 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
2019 |
tgatcattttgttatttagttttaatacaactttgctctttttgtaactaaatatgatcatct |
1957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 266929 - 266755
Alignment:
| Q |
16 |
aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata |
115 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| || || ||||||||||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
266929 |
aagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgttttaaataaaaacactgtgagtaagattgatatcaa |
266830 |
T |
|
| Q |
116 |
tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| |||| |
|
|
| T |
266829 |
tgatcaatttgttatttagttttaatacgactttgctctttttggacaaaatatgaccatctcatactagtattt |
266755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1870 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold1870
Description:
Target: scaffold1870; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 393 - 557
Alignment:
| Q |
26 |
taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
393 |
taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt |
492 |
T |
|
| Q |
126 |
gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
493 |
gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattt |
557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 9111 - 9275
Alignment:
| Q |
26 |
taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
9111 |
taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt |
9210 |
T |
|
| Q |
126 |
gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||| ||| |||| |
|
|
| T |
9211 |
gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatattagtattt |
9275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 3272 - 3109
Alignment:
| Q |
27 |
aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttg |
126 |
Q |
| |
|
||||||||||||||||||||||| ||||| || | |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
3272 |
aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg |
3173 |
T |
|
| Q |
127 |
ttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
3172 |
ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattt |
3109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 12235 - 12072
Alignment:
| Q |
27 |
aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttg |
126 |
Q |
| |
|
||||||||||||||||||||||| ||||| || | |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
12235 |
aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg |
12136 |
T |
|
| Q |
127 |
ttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
190 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
12135 |
ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattt |
12072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 61238 - 61314
Alignment:
| Q |
86 |
agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga |
161 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
61238 |
agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga |
61314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 18075430 - 18075506
Alignment:
| Q |
86 |
agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga |
161 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
18075430 |
agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga |
18075506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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