View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_low_2 (Length: 614)
Name: NF16745_low_2
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 89 - 595
Target Start/End: Complemental strand, 34879681 - 34879167
Alignment:
| Q |
89 |
gttccacaagaaaaacaaaattgaggggaagctaagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34879681 |
gttccacaagaaaaacaaaattgaggggaagctaagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttc |
34879582 |
T |
|
| Q |
189 |
atcatcctttaaaatacaaaacaaaatttccaatgcatcnnnnnnnca--------ctactagagacaaataaaataaattcagaaaccatttcaaaaga |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34879581 |
atcatcctttaaaatacaaaacaaaatttccaatgcataaaaaaaaaaaaaaaaaactactagagacaaataaaataaattcagaaaccatttcaaaaga |
34879482 |
T |
|
| Q |
281 |
aaaccttactttatctttctcaagttgttccttaagagaaaactgagggccaagatccaattccaacttgggttcttcctcttcatcttcatctggcaca |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34879481 |
aaaccttactttatctttctcaagttgttccttaagagaaaactgagggccaagatccaattccaacttgggttcttcctcttcatcttcatctggcaca |
34879382 |
T |
|
| Q |
381 |
atttcctcagcttcatcatagttgacaccaaccttgttggttcctttgtttttgtgctcttcctccaaatgagcattgaaggaaacatctttggttgtag |
480 |
Q |
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| T |
34879381 |
atttcctcagcttcatcatagttgacaccaaccttgttggttcctttgtttttgtgctcttcctccaaatgagcattgaaggaaacatctttggttgtag |
34879282 |
T |
|
| Q |
481 |
acacagctcctacagcagcagacatgtcaaatttagaggacagtttttgcttcctatatcccttggtaatgcaatattgtatggaatagagcaattaaag |
580 |
Q |
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| T |
34879281 |
acacagctcctacagcagcagacatgtcaaatttagaggacagtttttgcttcctatatcccttggtaatgcaatattgtatggaatagagcaattaaag |
34879182 |
T |
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| Q |
581 |
attagagaacagtag |
595 |
Q |
| |
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| T |
34879181 |
attagagaacagtag |
34879167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 38371605 - 38371681
Alignment:
| Q |
122 |
aagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatcatccttt |
198 |
Q |
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||||||||||||||||||| | ||||||| | || ||||| || ||||||||||| ||||| ||||||||||||||| |
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| T |
38371605 |
aagtacctccaacagcagatatatcaacactacccagaagttgctctttccattttctcaaactttcatcatccttt |
38371681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 38371772 - 38371827
Alignment:
| Q |
288 |
actttatctttctcaagttgttccttaagagaaaactgagggccaagatccaattc |
343 |
Q |
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||||||||||||||||| |||||||| || | ||| ||||| |||||||||||||| |
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| T |
38371772 |
actttatctttctcaagctgttccttgagggtaaattgaggaccaagatccaattc |
38371827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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