View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16745_low_7 (Length: 357)

Name: NF16745_low_7
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16745_low_7
NF16745_low_7
[»] chr8 (1 HSPs)
chr8 (16-353)||(29272081-29272418)
[»] chr6 (44 HSPs)
chr6 (16-353)||(27609363-27609700)
chr6 (16-353)||(27716742-27717079)
chr6 (16-353)||(27696832-27697169)
chr6 (16-353)||(27680564-27680901)
chr6 (16-190)||(27704669-27704843)
chr6 (16-353)||(31286158-31286492)
chr6 (16-349)||(27675854-27676194)
chr6 (16-349)||(27591257-27591595)
chr6 (16-210)||(27603080-27603275)
chr6 (26-196)||(28787865-28788035)
chr6 (26-196)||(28793986-28794156)
chr6 (16-349)||(26804060-26804402)
chr6 (16-161)||(26624864-26625009)
chr6 (16-153)||(26648072-26648209)
chr6 (16-161)||(26730841-26730986)
chr6 (16-153)||(26754040-26754177)
chr6 (259-353)||(26648278-26648372)
chr6 (259-353)||(26754246-26754340)
chr6 (86-353)||(27425852-27426125)
chr6 (265-353)||(28788089-28788177)
chr6 (265-353)||(28794210-28794298)
chr6 (223-353)||(26625031-26625163)
chr6 (223-353)||(26731008-26731140)
chr6 (259-353)||(25491543-25491637)
chr6 (264-353)||(27704487-27704576)
chr6 (36-112)||(26813171-26813247)
chr6 (26-163)||(26863183-26863320)
chr6 (16-83)||(26885684-26885751)
chr6 (259-302)||(26960920-26960963)
chr6 (259-302)||(27663492-27663535)
chr6 (65-159)||(27529741-27529838)
chr6 (259-296)||(26813339-26813376)
chr6 (259-296)||(26951591-26951628)
chr6 (259-296)||(26979230-26979267)
chr6 (259-302)||(26637410-26637453)
chr6 (259-302)||(26743376-26743419)
chr6 (16-132)||(27663671-27663783)
chr6 (16-118)||(25491785-25491887)
chr6 (259-353)||(26863439-26863533)
chr6 (18-118)||(26960729-26960825)
chr6 (259-301)||(26885915-26885957)
chr6 (259-301)||(27216300-27216342)
chr6 (262-302)||(26657820-26657860)
chr6 (262-302)||(26763791-26763831)
[»] chr1 (2 HSPs)
chr1 (16-353)||(266598-266929)
chr1 (259-296)||(28125981-28126018)
[»] scaffold0349 (1 HSPs)
scaffold0349 (16-177)||(1957-2119)
[»] scaffold1870 (2 HSPs)
scaffold1870 (26-196)||(393-563)
scaffold1870 (265-353)||(616-704)
[»] scaffold0419 (2 HSPs)
scaffold0419 (26-195)||(9111-9280)
scaffold0419 (265-353)||(9335-9423)
[»] scaffold0277 (4 HSPs)
scaffold0277 (27-196)||(3103-3272)
scaffold0277 (27-196)||(12066-12235)
scaffold0277 (265-353)||(2963-3051)
scaffold0277 (265-353)||(11926-12014)
[»] scaffold0003 (1 HSPs)
scaffold0003 (86-353)||(61238-61511)
[»] chr4 (7 HSPs)
chr4 (263-353)||(18075613-18075703)
chr4 (86-161)||(18075430-18075506)
chr4 (261-302)||(18653835-18653876)
chr4 (261-302)||(18677917-18677958)
chr4 (261-302)||(18687971-18688012)
chr4 (261-302)||(18722431-18722472)
chr4 (261-302)||(18729853-18729894)
[»] chr2 (1 HSPs)
chr2 (267-353)||(17991454-17991540)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 29272418 - 29272081
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  29272418 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 29272319  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29272318 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttattttcactcaattgcatgttaata 29272219  T
Q  216 tttgtacatcttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatgg 315  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  29272218 tttgtacatcttatttttattgtggttgattcatatttttttctttgttaaaagggaactagtaaaattgaaatgatatatacgaatctccattccatag 29272119  T
Q  316 aatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||| |||||||||||||||||||||||||||||||||    
T  29272118 aatctgtgatagacaagaaaggaaaggccttcaagaag 29272081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 27609700 - 27609363
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27609700 aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 27609601  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27609600 tgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 27609501  T
Q  216 tttgtacatcttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatgg 315  Q
    | | ||  |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27609500 tatctatgtcttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatgg 27609401  T
Q  316 aatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27609400 aatccgtgatagacaagaaaggaaaggccttcaagaag 27609363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 27717079 - 27716742
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27717079 aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 27716980  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| | || ||||||||||||||||||||| ||||||||||    
T  27716979 tgatcattttgttatttagttttaatacaactttgctctttttgaactaaatatgatcatctaaaacgagcatttcttttcactcaattacatgttaata 27716880  T
Q  216 tttgtacatcttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatgg 315  Q
    ||| || ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27716879 tttctatatcttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatgg 27716780  T
Q  316 aatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27716779 aatccgtgatagacaagaaaggaaaggccttcaagaag 27716742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 27697169 - 27696832
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||    
T  27697169 aagaatcaactaaagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttttaagagaaaacactgtgagtaagattgatatcta 27697070  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27697069 tgatcattttgttatttagttttaatacgactttgctctatttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 27696970  T
Q  216 tttgtacatcttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatgg 315  Q
    ||| || ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27696969 tttctatatcttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatgg 27696870  T
Q  316 aatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27696869 aatccgtgatagacaagaaaggaaaggccttcaagaag 27696832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 27680564 - 27680901
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  |||||||||||||||| |||||||||||||  | || || |||||| ||| |||||||| ||||||||||||||||| ||||||||| ||    
T  27680564 aagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaagaaaacactgtgagtatgattgatatcta 27680663  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27680664 tgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 27680763  T
Q  216 tttgtacatcttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatgg 315  Q
    | | ||  |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27680764 tatctatgtcttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatgg 27680863  T
Q  316 aatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27680864 aatccgtgatagacaagaaaggaaaggccttcaagaag 27680901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 27704843 - 27704669
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||| ||||||||||||||||||||||||||| ||    
T  27704843 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtcttaaaagaaaacactgtgagtaagattgatatcta 27704744  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt 190  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| ||||    
T  27704743 tgatcattttgttatttagttttaatatgactttgctctttttggactaaatatgaccatctcatactagtattt 27704669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 31286158 - 31286492
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  ||||||||| ||||||||||||||| |||| || || ||||||||||||| || |||||  |||||||||||||||||||||||||| ||    
T  31286158 aagaatcacctaaagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctttaaatgaaaacactgtgagtaagattgatatcta 31286257  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    || ||| |||||||||||||||||| ||||||||||||||||         ||| | ||||| ||||||| |||| |||| ||| |||| ||||| |||     
T  31286258 tgttcaatttgttatttagttttaaaacgactttgctctttt---------tatgaccatctcatactagtatttatttttacttaattacatgtaaatt 31286348  T
Q  216 tttgtacatcttatttttattgtggttgattcatg------nnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccatt 309  Q
    | |  | |||||||||||||||||||||||| |||              |||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  31286349 tctccatatcttatttttattgtggttgatttatgttcttttttttttttttgttaaaagggaactagtaaaattgaaatgatatatatgaatttccact 31286448  T
Q  310 ccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||    
T  31286449 ccatggaatccgtaatagaccagaaaggaatggccttcaagaag 31286492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 27676194 - 27675854
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  ||||||||||||||||||||| |||||||| |  || ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||    
T  27676194 aagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaacagaaaacactgtgagtaagattgatatcta 27676095  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt--cactcaattgcatgttaa 213  Q
    || ||| ||||||||||||||||||||| | ||||||| ||||||||||||||| | ||||| ||| ||| |||| ||||  |||| |||| ||||| ||    
T  27676094 tgttcaatttgttatttagttttaatacaattttgctcattttggactaaatatgaccatctcatattagtatttttttttccacttaattacatgtaaa 27675995  T
Q  214 tatttgtacatcttatttttattgtggttgattca-----tgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccat 308  Q
    | | | |  |    |||||||||||||||||| ||     |         ||||||||||||||||| |||||| ||||||||||| ||||||| | ||     
T  27675994 tttctctgtaaaagatttttattgtggttgatgcattttttatttttatttttgttaaaagggaactggtaaaactgaaatgatatgtatgaatttgcac 27675895  T
Q  309 tccatggaatccgtgatagacaagaaaggaaaggccttcaa 349  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  27675894 tccatggaatccgtaatagacaagaaaggaaaggccttcaa 27675854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 27591595 - 27591257
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  ||||||||||||||||||||| |||||||| |  || ||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||    
T  27591595 aagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaaaagaaaacactgtgcgtaagattgatatcta 27591496  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    || ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||||| || | ||| |||| |||| ||||| |||     
T  27591495 tgttcaatttgttatttagttttaatacaactttgctcattttggactaaatatgaccatctcatactagtatatttttccacttaattacatgtaaatt 27591396  T
Q  216 tttgtacatcttatttttattgtggttgattca-----tgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattc 310  Q
    | | |  | |  |||||||||||||||||| ||     |         |||||||| |||||||| |||||| ||||||||||| ||||||| | || ||    
T  27591395 tctctgtaacagatttttattgtggttgatgcattttttatttttatttttgttaacagggaactggtaaaactgaaatgatatgtatgaatttgcactc 27591296  T
Q  311 catggaatccgtgatagacaagaaaggaaaggccttcaa 349  Q
     |||||||| || ||||||||||||||||||||||||||    
T  27591295 tatggaatctgtaatagacaagaaaggaaaggccttcaa 27591257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 27603275 - 27603080
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  |||||||||||||||||||||||||||||| || || || |||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  27603275 aagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttctaacagaaaacactgtgagtaagattgatatata 27603176  T
Q  116 tgatcattttgttatttagttttaatacgac-tttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgt 210  Q
      |||| |||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||| ||||||  |||| ||| |||| |||| |||||    
T  27603175 atatcaatttgttatttagttttaatatgacttttggtctttttggactaaatatgatcatctcatactattatttttttccacttaattacatgt 27603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 28787865 - 28788035
Alignment:
Q  26 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 125  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||| ||||||| ||||||||| |||| ||| |||    
T  28787865 taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt 28787964  T
Q  126 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 196  Q
    |||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  28787965 gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc 28788035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 28793986 - 28794156
Alignment:
Q  26 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 125  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||| ||||||| ||||||||| |||| ||| |||    
T  28793986 taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt 28794085  T
Q  126 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 196  Q
    |||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  28794086 gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc 28794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 26804060 - 26804402
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  |||||| |||| | || |||||||||||||  | || || |||||||||| |||| ||| |||||||| |||||||||||||||||| ||    
T  26804060 aagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagttcatgttataaaagaaaacattgtgagtaagattgatattta 26804159  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt-cactcaattgcatgttaat 214  Q
    || ||| |||||||||||||||  ||||||||||||  |||| |||||| |||| | ||||| ||||||| |||| |||| |||| |||| ||| | |||    
T  26804160 tgttcaatttgttatttagtttagatacgactttgcatttttaggactacatatgaccatctcatactagtatttttttttcacttaattacatataaat 26804259  T
Q  215 atttgtacatcttatttttattgtggttgattcatgnnnnnnncttt---------gttaaaagggaactagtaaaattgaaatgatatatatgaatctc 305  Q
     | | || |||||||| |||||||| |||||| |||        |||         |||||||||||||||||||||||||||||||| |||||||| ||    
T  26804260 ttctctatatcttattgttattgtgattgatt-atgttatttttttttttttttgtgttaaaagggaactagtaaaattgaaatgataaatatgaatttc 26804358  T
Q  306 cattccatggaatccgtgatagacaagaaaggaaaggccttcaa 349  Q
    || |||||||||||||| |||||| |||||||||||||||||||    
T  26804359 cactccatggaatccgtaatagaccagaaaggaaaggccttcaa 26804402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 26624864 - 26625009
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| ||    
T  26624864 aagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatcta 26624963  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttgga 161  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||    
T  26624964 tgatcaatttattatttagttttaatactactttgctctttttgga 26625009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 26648072 - 26648209
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  ||||||||||||||||  |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| ||    
T  26648072 aagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatcta 26648171  T
Q  116 tgatcattttgttatttagttttaatacgactttgctc 153  Q
    |||||| |||||||||||||||||||||||||||||||    
T  26648172 tgatcaatttgttatttagttttaatacgactttgctc 26648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 26730841 - 26730986
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| ||    
T  26730841 aagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatcta 26730940  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttgga 161  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||    
T  26730941 tgatcaatttattatttagttttaatactactttgctctttttgga 26730986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 26754040 - 26754177
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  ||||||||||||||||  |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| ||    
T  26754040 aagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatcta 26754139  T
Q  116 tgatcattttgttatttagttttaatacgactttgctc 153  Q
    |||||| |||||||||||||||||||||||||||||||    
T  26754140 tgatcaatttgttatttagttttaatacgactttgctc 26754177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 26648278 - 26648372
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  26648278 tttgttgaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaag 26648372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 26754246 - 26754340
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  26754246 tttgttgaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaag 26754340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 353
Target Start/End: Complemental strand, 27426125 - 27425852
Alignment:
Q  86 agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttggac-taaatattatcatctgatact 183  Q
    |||||||||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||  |  |||  | |||||||||||    
T  27426125 agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttggatatgtatacaagcatctgatact 27426026  T
Q  184 agcatttcttttcactcaattgcatgttaatatttgtacatcttatttttattgtggttgattcatgnnnnnnncttt------gttaaaagggaactag 277  Q
    |  | ||||||||| | |||| ||  | ||| | | ||  |||||||| |||||||||||||||||         |||      ||||||||||||| ||    
T  27426025 actaattcttttcagttaattacacataaatttctcta--tcttatttgtattgtggttgattcatcttttttttttttttttcgttaaaagggaaccag 27425928  T
Q  278 taaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| ||||||||||||||||||    
T  27425927 taaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaag 27425852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 28788089 - 28788177
Alignment:
Q  265 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||||||||||||||||||||||||    
T  28788089 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaag 28788177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 28794210 - 28794298
Alignment:
Q  265 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||||||||||||||||||||||||    
T  28794210 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaag 28794298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 353
Target Start/End: Original strand, 26625031 - 26625163
Alignment:
Q  223 atcttatttttattgtggttgattcatgnnnnnnncttt-gttaaaa-gggaactagtaaaattgaaatgatatatatgaatctccattccatggaatcc 320  Q
    ||||||||||||||||||||||||||||        ||| ||||||| |||||||||||||||||||||||||||||||||| | |  || |||||||||    
T  26625031 atcttatttttattgtggttgattcatgtttttcttttttgttaaaaagggaactagtaaaattgaaatgatatatatgaattttccctctatggaatcc 26625130  T
Q  321 gtgatagacaagaaaggaaaggccttcaagaag 353  Q
    || |||||| |||||||||||||||||| ||||    
T  26625131 gtaatagaccagaaaggaaaggccttcaggaag 26625163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 353
Target Start/End: Original strand, 26731008 - 26731140
Alignment:
Q  223 atcttatttttattgtggttgattcatgnnnnnnncttt-gttaaaa-gggaactagtaaaattgaaatgatatatatgaatctccattccatggaatcc 320  Q
    ||||||||||||||||||||||||||||        ||| ||||||| |||||||||||||||||||||||||||||||||| | |  || |||||||||    
T  26731008 atcttatttttattgtggttgattcatgtttttcttttttgttaaaaagggaactagtaaaattgaaatgatatatatgaattttccctctatggaatcc 26731107  T
Q  321 gtgatagacaagaaaggaaaggccttcaagaag 353  Q
    || |||||| |||||||||||||||||| ||||    
T  26731108 gtaatagaccagaaaggaaaggccttcaggaag 26731140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 25491637 - 25491543
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||  ||||||  ||| ||| ||||||||||||||    
T  25491637 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatttcccctccatggaattcgaaatagactggaatggagaggccttcaagaag 25491543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 353
Target Start/End: Complemental strand, 27704576 - 27704487
Alignment:
Q  264 taaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||| ||||||| ||||||||| | || |||||||||||| | |||||| | ||||||| |||||||||||||    
T  27704576 taaaagggaactagtaaaattcaaatgatgtatatgaattttcactccatggaatccataatagaccaaaaaggaatggccttcaagaag 27704487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 26813171 - 26813247
Alignment:
Q  36 ggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatat 112  Q
    |||||| |||||||| |||| || || ||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  26813171 ggagaacgaagtaggctatggtgtcaagatgatatagttcatgttttaaaagaaaacattgtgagtaagattgatat 26813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 26863183 - 26863320
Alignment:
Q  26 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 125  Q
    ||||||||| || ||| ||||||||||||| || || ||||||||| | |  ||||||  ||||||||||||||||||||||||||| ||||| || | |    
T  26863183 taaagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttttagaagaaaacactgtgagtaagattgatatttatgaacaatct 26863282  T
Q  126 gttatttagt-tttaatacgactttgctctttttggact 163  Q
    |||| ||||| ||||| || ||||||||| |||| ||||    
T  26863283 gtta-ttagtctttaacacaactttgctcgttttagact 26863320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 26885684 - 26885751
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 83  Q
    ||||||||| |||||||||||||||| | ||||||||||| || || ||||||||||||| |||||||    
T  26885684 aagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacgatgatatagttcatgtttta 26885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 26960920 - 26960963
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  26960920 tttgttaaaagggaactagtaaaattgaaatgatatatttgaat 26960963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 27663535 - 27663492
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  27663535 tttgttaaaagggaactagtaaaattgaaatgatatatctgaat 27663492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 27529838 - 27529741
Alignment:
Q  65 tgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgtt--atttag-ttttaatacgactttgctctttttg 159  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||| || || || ||||||  |||||| |||||| | ||| ||||||||||||    
T  27529838 tgatatagttcatgttttaaaaaaaaacactgtgagtaagattgatatctaggaacaatttgttaaatttagcttttaacatgacattgctctttttg 27529741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 26813339 - 26813376
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatat 296  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26813339 tttgttaaaagggaactagtaaaattgaaatgatatat 26813376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 26951591 - 26951628
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatat 296  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26951591 tttgttaaaagggaactagtaaaattgaaatgatatat 26951628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 26979230 - 26979267
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatat 296  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26979230 tttgttaaaagggaactagtaaaattgaaatgatatat 26979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 26637410 - 26637453
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  26637410 tttgttaaaagggaactagtaaaattcaaatgatatatctgaat 26637453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 26743376 - 26743419
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  26743376 tttgttaaaagggaactagtaaaattcaaatgatatatctgaat 26743419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 27663783 - 27663671
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    |||||||||||||||||||||||||  | | |||||| ||  | || |||||||||| || |||||||| | |||||||    |||||||||||||| ||    
T  27663783 aagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgatatagctcatgttttaaaacaaaacac----agtaagattgatatcta 27663688  T
Q  116 tgatcattttgttattt 132  Q
    ||| || ||||||||||    
T  27663687 tgaacaatttgttattt 27663671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 25491887 - 25491785
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  ||| || ||||||||| | |||||||| || || |  |||||||| ||||  ||||||||||||||||| || |||||||||||||| ||    
T  25491887 aagaatcacgtaatgatcctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttttaagagaaaacacggtaagtaagattgatatcta 25491788  T
Q  116 tga 118  Q
    |||    
T  25491787 tga 25491785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 26863439 - 26863533
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||| |||||||||||||||||||||||||| ||||| || ||   | ||| | |||| |||| ||||||  ||| ||||||||||||||||||    
T  26863439 tttgtgaaaagggaactagtaaaattgaaatggtatatctgcattgtccttcaacggaacccgtaatagactggaatggaaaggccttcaagaag 26863533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 26960729 - 26960825
Alignment:
Q  18 gaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatg 117  Q
    ||||||||||||||||||||| || | |||||||| || || |  ||||||||||||| |||||||  |||||| |     |||||||||||||||||||    
T  26960729 gaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtgatgatatagttcatgttttacaagaaaaaa----aagtaagattgatatatatg 26960824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 26885915 - 26885957
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaa 301  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  26885915 tttgttaaaagggaactagcaacattgaaatgatatatctgaa 26885957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 27216300 - 27216342
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatatatgaa 301  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
T  27216300 tttgttaaaagggaacttggaaaattgaaatgatatatttgaa 27216342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 26657820 - 26657860
Alignment:
Q  262 gttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  26657820 gttaaaagggaaccagtaacattgaaatgatatatctgaat 26657860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 26763791 - 26763831
Alignment:
Q  262 gttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  26763791 gttaaaagggaaccagtaacattgaaatgatatatctgaat 26763831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 266929 - 266598
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||  |||||||||||||||| ||||||||||||| || || ||||||||||||| ||||||||   |||||||||||||||||||||||||  |    
T  266929 aagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgttttaaataaaaacactgtgagtaagattgatatcaa 266830  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaata 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| |||| ||       | || ||||| | |     
T  266829 tgatcaatttgttatttagttttaatacgactttgctctttttggacaaaatatgaccatctcatactagtatttatt-------atttacatgtaagtt 266737  T
Q  216 tttgtacatcttatttttattgtggttgattcatg-nnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatg 314  Q
    | | || |||||||||||||||| |||||||||||         ||||||||||||||||||||||| |||||||||||||||||||| |||| || |||    
T  266736 tatctatatcttatttttattgttgttgattcatgtttttttgttttgttaaaagggaactagtaaagttgaaatgatatatatgaatttccactcgatg 266637  T
Q  315 gaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||| | || |||||| |||||||||||||||||||||||    
T  266636 gaacctgtaatagaccagaaaggaaaggccttcaagaag 266598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 28126018 - 28125981
Alignment:
Q  259 tttgttaaaagggaactagtaaaattgaaatgatatat 296  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  28126018 tttgttaaaagggaactggtaacattgaaatgatatat 28125981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 2119 - 1957
Alignment:
Q  16 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2119 aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 2020  T
Q  116 tgatcattttgttatttagttttaatacgactttgctctttttg-gactaaatattatcatct 177  Q
    |||||||||||||||||||||||||||| |||||||||||||||  ||||||||| |||||||    
T  2019 tgatcattttgttatttagttttaatacaactttgctctttttgtaactaaatatgatcatct 1957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 393 - 563
Alignment:
Q  26 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 125  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| |||    
T  393 taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt 492  T
Q  126 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 196  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  493 gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 616 - 704
Alignment:
Q  265 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||    
T  616 aaaagggaactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaag 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 9111 - 9280
Alignment:
Q  26 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 125  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| |||    
T  9111 taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt 9210  T
Q  126 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt 195  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||| ||| |||| ||||    
T  9211 gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatattagtatttttttt 9280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 9335 - 9423
Alignment:
Q  265 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||    
T  9335 aaaagggaactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaag 9423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 3272 - 3103
Alignment:
Q  27 aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttg 126  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| ||||    
T  3272 aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg 3173  T
Q  127 ttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 196  Q
    |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  3172 ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 12235 - 12066
Alignment:
Q  27 aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttg 126  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| ||||    
T  12235 aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg 12136  T
Q  127 ttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 196  Q
    |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  12135 ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc 12066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 3051 - 2963
Alignment:
Q  265 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||    
T  3051 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaag 2963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 12014 - 11926
Alignment:
Q  265 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||    
T  12014 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaag 11926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 353
Target Start/End: Original strand, 61238 - 61511
Alignment:
Q  86 agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttggac-taaatattatcatctgatact 183  Q
    |||||||||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||  |  |||  | |||||||||||    
T  61238 agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttggatatgtatacaagcatctgatact 61337  T
Q  184 agcatttcttttcactcaattgcatgttaatatttgtacatcttatttttattgtggttgattcatgnnnnnnncttt------gttaaaagggaactag 277  Q
    |  | ||||||||| | |||| ||  | ||| | | ||  |||||||| |||||||||||||||||         |||      ||||||||||||| ||    
T  61338 actaattcttttcagttaattacacataaatttctcta--tcttatttgtattgtggttgattcatcttttttttttttttttcgttaaaagggaaccag 61435  T
Q  278 taaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    ||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| ||||||||||||||||||    
T  61436 taaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaag 61511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 18075613 - 18075703
Alignment:
Q  263 ttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
    |||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| ||||||||||||||||||    
T  18075613 ttaaaagggaaccagtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaag 18075703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 18075430 - 18075506
Alignment:
Q  86 agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga 161  Q
    |||||||||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||    
T  18075430 agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga 18075506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 18653876 - 18653835
Alignment:
Q  261 tgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  18653876 tgttaaaagggaacaagtaaaattgagatgatatatctgaat 18653835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 18677958 - 18677917
Alignment:
Q  261 tgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  18677958 tgttaaaagggaacaagtaaaattgagatgatatatctgaat 18677917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 18688012 - 18687971
Alignment:
Q  261 tgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  18688012 tgttaaaagggaacaagtaaaattgagatgatatatctgaat 18687971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 18722472 - 18722431
Alignment:
Q  261 tgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  18722472 tgttaaaagggaacaagtaaaattgagatgatatatctgaat 18722431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 18729894 - 18729853
Alignment:
Q  261 tgttaaaagggaactagtaaaattgaaatgatatatatgaat 302  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  18729894 tgttaaaagggaacaagtaaaattgagatgatatatctgaat 18729853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 17991540 - 17991454
Alignment:
Q  267 aagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaag 353  Q
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T  17991540 aagggaactagtaaaattgaaatgatatatacgaatttcgattccatgaaatccgtaacagtctggaatggaaaggccttcaagaag 17991454  T

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