View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_low_8 (Length: 350)
Name: NF16745_low_8
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 51454962 - 51454641
Alignment:
| Q |
19 |
aaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454962 |
aaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatac |
51454863 |
T |
|
| Q |
119 |
atataatgccaaactcaaacatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgtggacttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51454862 |
atataatgccaaactcaaacatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgaggacttg |
51454763 |
T |
|
| Q |
219 |
tggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcccccggcatcattatca |
318 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
51454762 |
tggaacctcatttttggtggtttccttctccacctttctctttctgccgcgtctctttctcaccggttgaaatgatgaagagccgccggcatcattatca |
51454663 |
T |
|
| Q |
319 |
ccttcaccagcttcttcctttg |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
51454662 |
ccttcaccagcttcttcctttg |
51454641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 51496450 - 51496350
Alignment:
| Q |
19 |
aaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatac |
118 |
Q |
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|||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
51496450 |
aaccctgcccttgtcatttctctgacattgatggcacatcaaggattcctcttcgatccactgttgattgagaaacattaacagaatcacaattacatac |
51496351 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
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| T |
51496350 |
a |
51496350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 7996975 - 7996867
Alignment:
| Q |
41 |
tgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaac-agtaacagaaccacaattacat---acatataatgccaaactcaa |
136 |
Q |
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||||||||||| | | |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |
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| T |
7996975 |
tgacattgatggctcgttaaggattcctcttcaatccaccgttgattgaaaaacaattaacagaatgacaattacatgcaacatataattccaaactcaa |
7996876 |
T |
|
| Q |
137 |
acatataaa |
145 |
Q |
| |
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|||| |||| |
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| T |
7996875 |
acatgtaaa |
7996867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 51479472 - 51479399
Alignment:
| Q |
19 |
aaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaa |
92 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||| |
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| T |
51479472 |
aaccctgcccttgtcatttctctgacattgatggcacattaaggactcctctgcaatccactgttaattgaaaa |
51479399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 30208492 - 30208553
Alignment:
| Q |
58 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
119 |
Q |
| |
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|||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
30208492 |
taaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacataca |
30208553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 43160133 - 43160047
Alignment:
| Q |
216 |
ttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcc |
302 |
Q |
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||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| || ||||||||||||||||||| |
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| T |
43160133 |
ttgtggaacctcattttcggtggtttccttctccgattttctctttctgccgcatttctttctctccggttgaaatgatgaagagcc |
43160047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 27395570 - 27395515
Alignment:
| Q |
35 |
tttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaa |
90 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
27395570 |
tttctttgacattgatgacacattaaggactcctcttcaatccactgtttattgaa |
27395515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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