View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16745_low_9 (Length: 345)
Name: NF16745_low_9
Description: NF16745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16745_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 42257983 - 42257669
Alignment:
| Q |
14 |
tactcacatggatcttccttggcacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctactttctgacac |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42257983 |
tactcacatggatcttccttggtacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctattttctgacac |
42257884 |
T |
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| Q |
114 |
ttgggatgttggtggtggtggtggaggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtcctaatt |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257883 |
ttgggatggtggtggtggtggtggaggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtcctaatt |
42257784 |
T |
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| Q |
214 |
acaattttcaggtggatcaaaacctgtcttgggtgatgtacttgttattgtagggacagttttctatgcaataagcaatgttgttgaggtagtacaaatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42257783 |
acaattttcaggtggatcaaaacctgtcttgggtgatgtacttgttattgtagggacagttttctatgcaataagcaatgttgttgaggtagt-caaatt |
42257685 |
T |
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| Q |
314 |
attgagtacaaatttt |
329 |
Q |
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|||||||||||||||| |
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| T |
42257684 |
attgagtacaaatttt |
42257669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 42263482 - 42263180
Alignment:
| Q |
14 |
tactcacatggatcttccttggcacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctactttctgacac |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42263482 |
tactcacatggatcttccttggtacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctattttctgacac |
42263383 |
T |
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| Q |
114 |
ttgggatgttggtggtggtggtgg---aggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtccta |
210 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42263382 |
ttgggatggtggtggtggtggtggtggaggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtccta |
42263283 |
T |
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| Q |
211 |
attacaattttcaggtggatcaaaacctgtcttgggtgatgtacttgttattgtagggacagttttctatgcaataagcaatgttgttgaggtagtacaa |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
42263282 |
attacaattttcaggtggatcaaaacctatcttgggtgatgtacttgttattgtagggacagttttctttgcagtaagcaatgttgttgaggtagtacaa |
42263183 |
T |
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| Q |
311 |
att |
313 |
Q |
| |
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||| |
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| T |
42263182 |
att |
42263180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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