View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16746_high_2 (Length: 332)
Name: NF16746_high_2
Description: NF16746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16746_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 13214072 - 13213764
Alignment:
| Q |
5 |
ctgaaaagaaggtgcatatagctgagggaaagaggcagtagtaaagaccaaggtttaagaattaagatagtgagtaaggttttttaccctattagtgaaa |
104 |
Q |
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| T |
13214072 |
ctgaaaagaaggtgcatatagctgagagaaagaggcagtagtaaagaccaaggtttaagaattaagatagtgagtaaggttttttaccctattagtgtaa |
13213973 |
T |
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| Q |
105 |
gacatatattaatgtgttcttatttgcagcttttccaatatagaagaagaaacttacacatacacaaacatttacaaagacactagttataag-gagaga |
203 |
Q |
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| T |
13213972 |
gacatatattaatgtgttcttatttgcagcttttccaatatagaagaagaaacttacacatacacaaacatttacaaagacactagttataagagagaga |
13213873 |
T |
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| Q |
204 |
gaaatttcaagcatggtagtagtcttgaataaatgggacccactttgtaggtcccacaacaccgcccatgcgcacgctgtctttcttaccaatatcaaac |
303 |
Q |
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| T |
13213872 |
gaaatttcaagcatggtagta---ttgaatatatgggacccactttgtaggtcccacaacaccgcccatgcgcacgctgtctttcttaccaatatcaaac |
13213776 |
T |
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| Q |
304 |
ccatcatcgatc |
315 |
Q |
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|||||||||||| |
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| T |
13213775 |
ccatcatcgatc |
13213764 |
T |
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