View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16746_high_7 (Length: 250)
Name: NF16746_high_7
Description: NF16746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16746_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 52876982 - 52876735
Alignment:
| Q |
4 |
atgtcgaagaaaatcaaatagattcaataaatatctctatcatgagtgagttgtaaaaatcatta--gagacaacaacaaaccatttttcaatgcgttgt |
101 |
Q |
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| T |
52876982 |
atgtcaaataaaatcaaatagattcaataaatatctctatcatgagtgagttgtaaaaatcattattgagacaacaa-aaaccatttttcaatgcgttgt |
52876884 |
T |
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| Q |
102 |
tgtagaaagtttgttatggaatcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgttt |
201 |
Q |
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| T |
52876883 |
tgtagaaagtttgttatggaatcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgttt |
52876784 |
T |
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| Q |
202 |
gtgcatacgtcaacatgttcatttttaagtatgtagacaagagggtgaa |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52876783 |
gtgcatacgtcaacatgttcatttttaagtatgtagacaagagggtgaa |
52876735 |
T |
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