View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16746_high_8 (Length: 249)
Name: NF16746_high_8
Description: NF16746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16746_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 30273320 - 30273545
Alignment:
| Q |
18 |
tagatgaatccggaaaattagcagccacatgttaacctctctgtatagatggatccgaaaaaatgaaaccgaagttgtcaaaaatccggtgaatagcatc |
117 |
Q |
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| T |
30273320 |
tagatgaatccggaaaattagcagccacatgttaacctctctgtatagatggatctgaaaaaatgaaaccgaagttgtcaaaaatccggtgaatagcatc |
30273419 |
T |
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| Q |
118 |
cacaggtgttcggtatggtagacgaatcagggatgaagctttgctgcaaaagcaaacaagaaattacctccatcatctctaagaactccttttggttgtt |
217 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30273420 |
cacaggtgttcggtgtggtagacgaa------atgaagctttgctgcaaaagcaaacaagaaattacctccatcatctctaagaactccttttggttgtt |
30273513 |
T |
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| Q |
218 |
ttgtactctacagctatttgaagtctagtgat |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30273514 |
ttgtactctacagctatttgaagtctagtgat |
30273545 |
T |
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