View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16746_low_1 (Length: 555)
Name: NF16746_low_1
Description: NF16746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16746_low_1 |
 | |
|
| [»] scaffold0013 (3 HSPs) |
| | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 23824377 - 23824083
Alignment:
| Q |
19 |
taccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtca |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
23824377 |
taccttgtgatactttactcggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatctatacacctttagaggtca |
23824278 |
T |
|
| Q |
119 |
tctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcaaa |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23824277 |
tccccatttagaccttccctacattcgaattctttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcgaa |
23824178 |
T |
|
| Q |
219 |
aaacgctacttatctgtttatccatttgtttgcagctctttctctaaagtcagggggcggagaacaggatgaggatgaaagcacacaaggaccct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23824177 |
aaacgctacttatctgtttatccatttgtttgcaactctttctctaaagtcaaggggcggagaacaggatgaggatgaaagcacacaaggaccct |
23824083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 23826321 - 23826027
Alignment:
| Q |
19 |
taccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtca |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
23826321 |
taccttgtgatactttactcggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatctatacacctttagaggtca |
23826222 |
T |
|
| Q |
119 |
tctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcaaa |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23826221 |
tccccatttagaccttccctacattcgaattctttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcgaa |
23826122 |
T |
|
| Q |
219 |
aaacgctacttatctgtttatccatttgtttgcagctctttctctaaagtcagggggcggagaacaggatgaggatgaaagcacacaaggaccct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23826121 |
aaacgctacttatctgtttatccatttgtttgcaactctttctctaaagtcaaggggcggagaacaggatgaggatgaaagcacacaaggaccct |
23826027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 23805071 - 23805366
Alignment:
| Q |
19 |
taccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtca |
118 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
23805071 |
taccttgaaatactttactcggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacactaattatacacctttagaggtca |
23805170 |
T |
|
| Q |
119 |
tctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23805171 |
tctccatttagaccttccctacattcgaattctttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgtgaa |
23805270 |
T |
|
| Q |
219 |
aaacgctacttatctgtttatccatttgtttgcagctctttctctaaagtcagggggcggagaacaggatgaggatgaaagcacacaaggaccctc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
23805271 |
aaacgctacttatctgtttatccatttgtttgcagctgtttctctaaagtcagggggcggagaataggatgaggatgaaatcacacaaggaccctc |
23805366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 378 - 539
Target Start/End: Original strand, 23805430 - 23805591
Alignment:
| Q |
378 |
ttgatcgtcccccgaagagccagaaggtcctgtaaatgaagaaattgtaagtcccttttcttcaatcaatatttgaatgttccgttatgggatatattct |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23805430 |
ttgatcgtcccccgaagagccagaaggtcctgtaactgaagaaattgtaaatcccttttcttcgatcaatatttgaatgttccgttatgggatatattct |
23805529 |
T |
|
| Q |
478 |
tgacatcgaattcgacttgcagattgtaatccttcctaaagccatcgaagttaccacagtct |
539 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| | |||||||||| ||||||||||||| |
|
|
| T |
23805530 |
tgacatcgaattcgatttgcagattgaaatccttcatgaagccatcgaggttaccacagtct |
23805591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 386 - 539
Target Start/End: Complemental strand, 23824009 - 23823856
Alignment:
| Q |
386 |
cccccgaagagccagaaggtcctgtaaatgaagaaattgtaagtcccttttcttcaatcaatatttgaatgttccgttatgggatatattcttgacatcg |
485 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23824009 |
cccccaaagagccagaaggtcctgtaactgaagaaattgtaagtcccttttcttcgatcaatatttgaatgttccgttatgggatatattcttgacatcg |
23823910 |
T |
|
| Q |
486 |
aattcgacttgcagattgtaatccttcctaaagccatcgaagttaccacagtct |
539 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
23823909 |
aattcgatttgcagattgaaatccttcctgaagccatcgaagttaccacagtct |
23823856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 386 - 539
Target Start/End: Complemental strand, 23825953 - 23825800
Alignment:
| Q |
386 |
cccccgaagagccagaaggtcctgtaaatgaagaaattgtaagtcccttttcttcaatcaatatttgaatgttccgttatgggatatattcttgacatcg |
485 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23825953 |
cccccaaagagccagaaggtcctgtaactgaagaaattgtaagtcccttttcttcgatcaatatttgaatgttccgttatgggatatattcttgacatcg |
23825854 |
T |
|
| Q |
486 |
aattcgacttgcagattgtaatccttcctaaagccatcgaagttaccacagtct |
539 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
23825853 |
aattcgatttgcagattgaaatccttcctgaagccatcgaagttaccacagtct |
23825800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 13349091 - 13349385
Alignment:
| Q |
18 |
ctaccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtc |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| |||| ||||||| ||||||||| |
|
|
| T |
13349091 |
ctaccttgtgattctttactgggaatgaaacaaaaattaataaagaaagatgaggatagagtgactgcatctaaatgcaatctatacacatttagaggtc |
13349190 |
T |
|
| Q |
118 |
atctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcaa |
217 |
Q |
| |
|
|||| |||||| | || |||||| |||||||||| ||||| || |||||||||||||||| |||| ||| |||| | | ||||| ||||||| | | |
|
|
| T |
13349191 |
atcttcatttaaatctaccctacgttcgaattatgtctccataagaagtaggtatgaaatctctcga-tttatagaaca-aacaaacgaatgtttagaga |
13349288 |
T |
|
| Q |
218 |
aaaacgctacttatctgtttatccatttgtttgcagctctttctctaaagtcagggggcggagaacaggatgaggatgaaagcacacaaggaccctc |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| | ||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13349289 |
aaaatgctacttatctgtttatccatttgcttgcagctatccctctaaagtcaggggagggaggacatgatgacgatgaaagcacacaaggaccctc |
13349385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 134855 - 135148
Alignment:
| Q |
19 |
taccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtca |
118 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||| ||| |||||| |
|
|
| T |
134855 |
taccttgtgattctttactat-aatgaaacaaaaactaataaagaaagatgaggataaggtgactgcttctaaatacaatctattcacatttaaaggtca |
134953 |
T |
|
| Q |
119 |
tctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgattttgcagaaaatatcaaacaaatgttttgcaaa |
218 |
Q |
| |
|
|||||||||| | |||||| |||||||||| ||||||| ||||||||||||||||||| |||||| |||| || || | ||||||||| ||| | | | |
|
|
| T |
134954 |
tctccatttaaatcttccccacattcgaatcctttctccaataggagtaggtatgaaatttttcga-tttgtag-aaccaacaaacaaatatttag-aga |
135050 |
T |
|
| Q |
219 |
aaacg--ctacttatctgtttatccatttgtttgcagctctttctctaaagtcagggggcggagaacaggatgaggatgaaagcacacaaggaccctc |
314 |
Q |
| |
|
||| | ||||||||||||||||||| || ||||||||||||||||||| ||||||| | | | | ||||||||||||||||||||||||||||| |
|
|
| T |
135051 |
aaaggtactacttatctgtttatccacttacttgcagctctttctctaaaatcaggggatgtatgataagatgaggatgaaagcacacaaggaccctc |
135148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 405 - 528
Target Start/End: Original strand, 135250 - 135373
Alignment:
| Q |
405 |
tcctgtaaatgaagaaattgtaagtcccttttcttcaatcaatatttgaatgttccgttatgggatatattcttgacatcgaattcgacttgcagattgt |
504 |
Q |
| |
|
||||| || ||||||||||| |||||||||| |||| ||| ||||||||||||||| |||||||||| |||| | |||||||||| |||||| || |
|
|
| T |
135250 |
tcctgcaactgaagaaattggaagtccctttgcttcgatcgatatttgaatgttccagtatgggatatgctcttaatgtcgaattcgatttgcagcctga |
135349 |
T |
|
| Q |
505 |
aatccttcctaaagccatcgaagt |
528 |
Q |
| |
|
|||||||||| |||| |||||||| |
|
|
| T |
135350 |
aatccttcctgaagctatcgaagt |
135373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 12847302 - 12847419
Alignment:
| Q |
32 |
tttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctccatttagac |
131 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| |||| |||||| ||||| |||| |||||| | | |||| ||||||| ||||| |||||||| |
|
|
| T |
12847302 |
tttaatgggaatgaaacaaaaacttataaagaaagacaaggacaaggtgactgctactaagcacaatctgttcacctttagaggccatctacatttagat |
12847401 |
T |
|
| Q |
132 |
cttccctacattcgaatt |
149 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
12847402 |
ctccctcacattcgaatt |
12847419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 12024149 - 12024275
Alignment:
| Q |
23 |
ttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctc |
122 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| | ||||| ||||| | || || ||| |||| | || |||||||| |||||| ||||||| ||||| |
|
|
| T |
12024149 |
ttgtgatagtttaatgggaatgaaacaaaaatttataaacaaagacaaagacaatgtgactgccacgaagcacaatttgtacacctttagaggccatctg |
12024248 |
T |
|
| Q |
123 |
catttagaccttccctacattcgaatt |
149 |
Q |
| |
|
|||||||| | ||| ||||||||||| |
|
|
| T |
12024249 |
catttagatcatcctcacattcgaatt |
12024275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 13040153 - 13040051
Alignment:
| Q |
24 |
tgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctcc |
123 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | ||||||||||| || | |||||| ||||| |||| || ||||| |||||| ||||||| ||||| | |
|
|
| T |
13040153 |
tgtgatagtttgatgggaatgaaacaaaaatttataaagaaagacaagaacaaggtgactgctactaagcataatttgtacacctttagaggccatctgc |
13040054 |
T |
|
| Q |
124 |
att |
126 |
Q |
| |
|
||| |
|
|
| T |
13040053 |
att |
13040051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 13048230 - 13048128
Alignment:
| Q |
24 |
tgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctcc |
123 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | ||||||||||| || | |||||| ||||| |||| || ||||| |||||| ||||||| ||||| | |
|
|
| T |
13048230 |
tgtgatagtttgatgggaatgaaacaaaaatttataaagaaagacaagaacaaggtgactgctactaagcataatttgtacacctttagaggccatctgc |
13048131 |
T |
|
| Q |
124 |
att |
126 |
Q |
| |
|
||| |
|
|
| T |
13048130 |
att |
13048128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 20596254 - 20596424
Alignment:
| Q |
18 |
ctaccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtc |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||| |||| || ||||||||| |
|
|
| T |
20596254 |
ctaccttgtgattctttactgggaatgaaacaaaaactaataaagaaagatgaggataaagtgactgcgtctaaatgcaatatatatacatttagaggtc |
20596353 |
T |
|
| Q |
118 |
atctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgatttt |
188 |
Q |
| |
|
|||| |||||| |||| || ||||| |||| | |||||| ||||||| ||||| |||||||||| ||||| |
|
|
| T |
20596354 |
atcttcatttaaacctacctcacatttgaatcacttctccaataggagcaggtacgaaatctttcaatttt |
20596424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 22687341 - 22687449
Alignment:
| Q |
41 |
aatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctccatttagaccttccctac |
140 |
Q |
| |
|
||||||||||||| | ||||||||||| |||| |||||| ||||| ||||||||||||| |||| | ||||||| ||||| |||||||| ||||| || |
|
|
| T |
22687341 |
aatgaaacaaaaatttataaagaaagacaaggacaaggtgactgctactaaacacaatttgtacatctttagaggccatctacatttagatcttcctcac |
22687440 |
T |
|
| Q |
141 |
attcgaatt |
149 |
Q |
| |
|
||| ||||| |
|
|
| T |
22687441 |
atttgaatt |
22687449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 414 - 539
Target Start/End: Original strand, 22693274 - 22693399
Alignment:
| Q |
414 |
tgaagaaattgtaagtcccttttcttcaatcaatatttgaatgttccgttatgggatatattcttgacatcgaattcgacttgcagattgtaatccttcc |
513 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||| |||||| || |
|
|
| T |
22693274 |
tgaagagactgtaagtcccttttcttcgatcaatatttgaatgttctgttatgggatatattcttgacatcgaatttgatttgcagcttgaaatcctccc |
22693373 |
T |
|
| Q |
514 |
taaagccatcgaagttaccacagtct |
539 |
Q |
| |
|
| ||||||||||||||||||| |||| |
|
|
| T |
22693374 |
tgaagccatcgaagttaccacggtct |
22693399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 422 - 539
Target Start/End: Complemental strand, 23926955 - 23926838
Alignment:
| Q |
422 |
ttgtaagtcccttttcttcaatcaatatttgaatgttccgttatgggatatattcttgacatcgaattcgacttgcagattgtaatccttcctaaagcca |
521 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||| || |||||||||||||||||||||||||||||| |||||| | |||||||||| |||| | |
|
|
| T |
23926955 |
ttgtaagtcatttttcctcgatcaatatttgaatgtcccagtatgggatatattcttgacatcgaattcgatttgcagcctaaaatccttcctgaagcaa |
23926856 |
T |
|
| Q |
522 |
tcgaagttaccacagtct |
539 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
23926855 |
tcgaagtcaccacggtct |
23926838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 125199 - 125036
Alignment:
| Q |
23 |
ttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctc |
122 |
Q |
| |
|
|||||||| |||||| || |||||||||||| | ||||||||||| |||| |||||| |||| |||| |||||||| |||||| ||||||||||||| |
|
|
| T |
125199 |
ttgtgatagtttacttgggatgaaacaaaaaattataaagaaagacaaggacaaggtgactgccactaagcacaatttgtacacctttagaggtcatctg |
125100 |
T |
|
| Q |
123 |
catttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgatt |
186 |
Q |
| |
|
|||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
125099 |
catttagatcttccccacattcgaattctatctgaaataggagtaggtatgaaatctttcgatt |
125036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 110517 - 110354
Alignment:
| Q |
23 |
ttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctc |
122 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| | ||||||||||| |||| |||||| ||| |||| |||||||| |||||| ||||||||||||| |
|
|
| T |
110517 |
ttgtgatagtttactggggatgaaacaaaaatttataaagaaagacaaggacaaggtgactgacactaagcacaatttgtacacctttagaggtcatctg |
110418 |
T |
|
| Q |
123 |
catttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgatt |
186 |
Q |
| |
|
|||||||| |||||| ||||||||||| | | | |||||||||||||||||||||||||||| |
|
|
| T |
110417 |
catttagatcttcccaacattcgaattctatttgaaataggagtaggtatgaaatctttcgatt |
110354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 117347 - 117184
Alignment:
| Q |
23 |
ttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctc |
122 |
Q |
| |
|
|||||||| |||||| || |||||||||||| | |||| |||||| |||| |||||| ||| |||| |||||||| |||||| ||||||||||||| |
|
|
| T |
117347 |
ttgtgatagtttacttgggatgaaacaaaaatttataatgaaagacaaggacaaggtgactgtcactaagcacaatttgtacacctttagaggtcatctg |
117248 |
T |
|
| Q |
123 |
catttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatctttcgatt |
186 |
Q |
| |
|
|||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
117247 |
catttagatcttccccacattcgaattctatctgaaataggagtaggtatgaaatctttcgatt |
117184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 6796 - 6638
Alignment:
| Q |
23 |
ttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatctc |
122 |
Q |
| |
|
|||||||| |||||| | |||||||||||| | ||||| ||||| ||||||||||| |||| |||| ||||| | ||| | ||||||||||||| |
|
|
| T |
6796 |
ttgtgatagtttactaaggatgaaacaaaaatttataaacaaagacaaggataaggtgactgccactaagcacaacctgtactcttttagaggtcatctt |
6697 |
T |
|
| Q |
123 |
catttagaccttccctacattcgaattatttctccgataggagtaggtatgaaatcttt |
181 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
6696 |
catttagacctcctctacattcgaattctttctgaaataggaataggtatgaaatcttt |
6638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 26464770 - 26464928
Alignment:
| Q |
18 |
ctaccttgtgatactttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtc |
117 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||| ||| || ||||| ||||||| ||| |||| ||||| || ||| |||| |||||| || |
|
|
| T |
26464770 |
ctaccttgtgattctttattgggaatgaatcaaaaattaaaaacaaaagaaaaggataaagtgactgcaactaaatgaaacttacacacatttagagatc |
26464869 |
T |
|
| Q |
118 |
atctccatttagaccttccctacattcgaattatttctccgataggagtaggtatgaaa |
176 |
Q |
| |
|
|||| |||||||| || ||| | ||||||| |||||| | ||||||||||||| |||| |
|
|
| T |
26464870 |
atcttcatttagatctaccccatgttcgaatcatttctgcaataggagtaggtaagaaa |
26464928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 15278 - 15189
Alignment:
| Q |
32 |
tttactgggaatgaaacaaaaactaataaagaaagatgaggataaggtgtctgcttctaaacacaatttatacaccattagaggtcatct |
121 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||| |||| || ||| |||| |||| |||| || |||||| ||||||| ||||| |
|
|
| T |
15278 |
tttaatgggaatgaaacaaaaatttataaagaaagataaggacaaagtgactgccactaagtacaacttgtacacctttagaggccatct |
15189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 387612 - 387568
Alignment:
| Q |
23 |
ttgtgatactttactgggaatgaaacaaaaactaataaagaaaga |
67 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
387612 |
ttgtgatagtttaatgggaatgaaacaaaaatttataaagaaaga |
387568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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