View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16746_low_5 (Length: 287)
Name: NF16746_low_5
Description: NF16746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16746_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 35491295 - 35491041
Alignment:
| Q |
20 |
ataaaaacataaatttgtcccttgtatg--acatgtacacactaacgtaatatattgcatgctcataaactataaacaccaatataaggcgttactatcg |
117 |
Q |
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| T |
35491295 |
ataaaaacataaaattgtcccttgtatgggacatgtacacactaacgtaatatactgcatgctcataaactataaacaccaatataaggcgttactatcg |
35491196 |
T |
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| Q |
118 |
atgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491195 |
atgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatc |
35491096 |
T |
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| Q |
218 |
actcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaattt |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491095 |
actcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaattt |
35491041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 35497483 - 35497344
Alignment:
| Q |
48 |
acatgtacacactaacgtaatatattgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctctt |
147 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35497483 |
acatgtacacacttttataatatattgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctctt |
35497384 |
T |
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| Q |
148 |
ccacttcactaatgttcttcatggtcttcctttcgaaatc |
187 |
Q |
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| T |
35497383 |
ccacttcactaatgttcttcatggtcttcctttcgaaatc |
35497344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 35504194 - 35504028
Alignment:
| Q |
68 |
tatattgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttc |
167 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||||| | |||||| ||| |||| |
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| T |
35504194 |
tatattgcattctcataaattataaacaccaatataaggcattaacactgatgccatccaaagttttccatctttctcttcaatttcactgatgaacttc |
35504095 |
T |
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| Q |
168 |
atggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatcactcagctttacagctg |
234 |
Q |
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| T |
35504094 |
aaggtcttcccttcacaatcttccaggacttctaatatttccccttcatcactcagctttatagctg |
35504028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 35512825 - 35512660
Alignment:
| Q |
69 |
atattgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttca |
168 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||| | || || ||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
35512825 |
atattgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcttccacttcactgatgaacttca |
35512726 |
T |
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| Q |
169 |
tggtcttcctttcgaaatcttctaaggtttctaatatttctccttcatcactcagctttacagctg |
234 |
Q |
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| T |
35512725 |
aggtcttcccttcacgatcttccagactttctattatttccccttcatcactcagctttatagctg |
35512660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 272
Target Start/End: Complemental strand, 40161731 - 40161548
Alignment:
| Q |
80 |
tcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctt |
179 |
Q |
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|||||||||||||| ||||||||||||| ||| | ||| ||||| ||||||| ||||||||||| ||| ||||||||| | |||||||||||| | |
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| T |
40161731 |
tcataaactataaataccaatataaggcattaacactgatccaatcaaaagtttaccatctttctcatccgcttcactaacatatctcatggtcttccct |
40161632 |
T |
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| Q |
180 |
tcgaaatcttctaaggtttctaatatttctccttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaattt |
272 |
Q |
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| T |
40161631 |
tccacaa---------tttctaatatttccccttcatcactcaactttatagctgcattatgcaaagcaacccaaaactgcccatctgaattt |
40161548 |
T |
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