View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16747_high_1 (Length: 385)
Name: NF16747_high_1
Description: NF16747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16747_high_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 12145048 - 12144663
Alignment:
| Q |
1 |
atgaagctcaaagaaaacttgtgaggctggcttatcaagaaatttatcatcaagatcttatagaacagctcaaaactgaactttcaggaaactttgaggt |
100 |
Q |
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| T |
12145048 |
atgaagctcaaagaaaacttgtgaggctggcttatcaagaaatttatcatcaagatcttatagaacagctcaaaactgaactttcaggaaactttgaggt |
12144949 |
T |
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| Q |
101 |
-aaatatatgttacaattcataacactaatgttttataagttaccattattctgtatgttttgagtgaatatcattctaattgccaaaaatttataccat |
199 |
Q |
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| T |
12144948 |
taaatatatgttacaattcataacactaatgttttataagttaccattattctgtatgttttgagtgaatatcattctaattgccaaaaatttataccat |
12144849 |
T |
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| Q |
200 |
tgaaattagagagccatttcccattggataatggatccagctgaaagagatgctacacttattaatgaggcattaaagaaggcaacaccagattacaaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12144848 |
tgaaattagagagccatttcccattggataatggatccagctgaaagagatgctacacttattaacgaggcattaaagaaggcaacaccagattacaaag |
12144749 |
T |
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| Q |
300 |
tgattattgagattgtttgcactagaaattctgaagagcttctggctttaaagcgttcatatcattctctttacaagcattgcctt |
385 |
Q |
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| T |
12144748 |
tgattattgagattgtttgcactagaaattctgaagagcttctggctttaaagcgttcatatcattctctttacaagcattgcctt |
12144663 |
T |
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