View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16747_high_2 (Length: 345)
Name: NF16747_high_2
Description: NF16747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16747_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 88 - 322
Target Start/End: Complemental strand, 48178913 - 48178679
Alignment:
| Q |
88 |
atattgaatcttgaaatcatagagtgacattgacattgagagaacaagaacaagattggtaacctaggtcaaacaacctctgcaacacgacaagtgttaa |
187 |
Q |
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| T |
48178913 |
atattgaatcttgaaagcatagagtgacattgacattgagagaacaggaacaagattggtaacctaggtcaaacaacctctgcaacacgacaagtgttaa |
48178814 |
T |
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| Q |
188 |
aacacagttcggatccaatagaattattcccaatctggagatttcaatttctgaatccaaaatttaattaatatttgtaaactgcgaggtcggaattttc |
287 |
Q |
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| T |
48178813 |
aacacagttcggatccaatagaattattcccaatctggagatttcaatttatgaatccaaaatttaattaatatttgtaaactgcgaggtcggaattttc |
48178714 |
T |
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| Q |
288 |
ccatgattaagatgcggaagaagagagtttcatgg |
322 |
Q |
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| T |
48178713 |
ccatgattaagatgcggaagaagagagtttcatgg |
48178679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 48178996 - 48178937
Alignment:
| Q |
33 |
gatccagaaactgagttcagggttcaattttcaaaaagcaaagcataaaaatacaatatt |
92 |
Q |
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| T |
48178996 |
gatccagaaactgagttcagggttcaattttgaaaaagcaaagcataaaaatacaatatt |
48178937 |
T |
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