View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16747_low_1 (Length: 633)
Name: NF16747_low_1
Description: NF16747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16747_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 21 - 625
Target Start/End: Original strand, 8349989 - 8350593
Alignment:
| Q |
21 |
gtcgacgtgtcccgtgtctgtgtttgtatctgtgcttcataacttaaaaaacatgagcatgagtatgaagagattacttactgattgatgagattataga |
120 |
Q |
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|||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8349989 |
gtcgacgtgtcccgtgtctgtgttcgggtccgtgcttcatagcttaaaaaacatgagcatgagtatgaagagattacttactgattgatgagattataga |
8350088 |
T |
|
| Q |
121 |
ccctaaggatcttatgaagaagatagttataaaggcttcccaagacaccaccaatgattccaataatagcaacaggaacaatatccataacattataact |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350089 |
ccctaaggatcttatgaagaagatagttataaaggcttcccaagacaccaccaatgattccaataatagcaacaggaacaatatccataacattataact |
8350188 |
T |
|
| Q |
221 |
cacagcaacattactaacatcaaacataatcaaaccaccttcaccaaaaagaccacatttcccgtcatgacaaagttcaatgaatgctcttagaacaacc |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
8350189 |
cacagcaacattactaacatcaaacataatcaaacctccttcaccaaaaagaccacatttcccttcatgacaaagttcaatgaatgcccttagaacaacc |
8350288 |
T |
|
| Q |
321 |
acaacaacagctgtgctacaaaaagttctccataaaagagcacttctccaccaacttgcaacctcttcaagagaaaagagaacgccgccaaccggagctc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350289 |
acaacaacagctgtgctacaaaaagttctccataaaagagcacttctccaccaacttgcaacctcttcaagagaaaagagaacgccgccaaccggagctc |
8350388 |
T |
|
| Q |
421 |
ggaaagccgcgcaaacccccgatgaagctccacatgtgattagatcgcgacggtcgcgatcgttgttgaagtatcttacccatttccatttgattctatg |
520 |
Q |
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| T |
8350389 |
ggaaagccgcgcaaacccccgacgaagctccacatgtgattagatcgcgacggtcgcgatcgttgttgaagtatcttacccatttccatttgattctatg |
8350488 |
T |
|
| Q |
521 |
attgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttcttttcctaagtctagacctgctgaaacagctcct |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350489 |
attgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttcttttcctaagtctagacctgctgaaacagctcct |
8350588 |
T |
|
| Q |
621 |
atgct |
625 |
Q |
| |
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||||| |
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| T |
8350589 |
atgct |
8350593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 97 - 625
Target Start/End: Complemental strand, 10398256 - 10397728
Alignment:
| Q |
97 |
cttactgattgatgagattatagaccctaaggatcttatgaagaagatagttataaaggcttcccaagacaccaccaatgattccaataatagcaacagg |
196 |
Q |
| |
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||||||||||||| ||||| |||| || |||| ||| || ||||||| ||||||||||||||||| | ||||| ||||||||||| | |||||||| |
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| T |
10398256 |
cttactgattgattagattgtagagtctgaggaccttgtgtagaagatgattataaaggcttcccaataatccacctatgattccaatgactgcaacagg |
10398157 |
T |
|
| Q |
197 |
aacaatatccataacattataactcacagcaacattactaacatcaaacataatcaaaccaccttcaccaaaaagaccacatttcccgtcatgacaaagt |
296 |
Q |
| |
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| |||||||| |||| || || |||| |||||| |||||||||||||| |||| || ||| |||| ||||| |||||||||||| | || | | |
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| T |
10398156 |
gaggatatccatcacatggtacctaacagtaacattgctaacatcaaacatgatcagcccgcctgcaccgaaaaggccacatttcccggagttgcagatt |
10398057 |
T |
|
| Q |
297 |
tcaatgaatgctcttagaacaaccacaacaacagctgtgctacaaaaagttctccataaaagagcacttctccaccaacttgcaacctcttcaagagaaa |
396 |
Q |
| |
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|||||||| || || |||| ||||| || |||||||||| | |||| |||||||||| |||||||||||||||||| |||| ||||||||||| | || |
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| T |
10398056 |
tcaatgaaggccctaagaattaccaccaccacagctgtgcaaaaaaaggttctccatagaagagcacttctccaccaggttgctacctcttcaagggcaa |
10397957 |
T |
|
| Q |
397 |
agagaacgccgccaaccggagctcggaaagccgcgcaaacccccgatgaagctccacatgtgattagatcgcgacggtcgcgatcgttgttgaagtatct |
496 |
Q |
| |
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| ||||| || ||||| || | | ||| || || ||||| || || || || ||||| || || ||||| |||||||| ||||| |||||||| |||| |
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| T |
10397956 |
aaagaactccaccaacaggggacctgaacgctgcacaaactcctgaagatgcaccacaggtaataagatcccgacggtcacgatcattgttgaaatatcg |
10397857 |
T |
|
| Q |
497 |
tacccatttccatttgattctatgattgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttcttttcctaag |
596 |
Q |
| |
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| ||| |||||||| | | | |||||| || ||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||||||| | |
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| T |
10397856 |
cagccagcgccatttgactttgtaattgtcagggcctccttggcctagtaaggaagctatgcaacttcctatatgtaccaagggtccttcttttccaaga |
10397757 |
T |
|
| Q |
597 |
tctagacctgctgaaacagctcctatgct |
625 |
Q |
| |
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||||| ||||| || |||||||| ||||| |
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| T |
10397756 |
tctaggcctgcagagacagctccaatgct |
10397728 |
T |
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