View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16747_low_3 (Length: 346)
Name: NF16747_low_3
Description: NF16747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16747_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 12039847 - 12039519
Alignment:
| Q |
1 |
tgtaagttccttcaaggatggaaaaaataatattggtgtagtaaaggaagggaaattaccaactttattgtcttttgcaatgaatttcagtgagtccaac |
100 |
Q |
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| T |
12039847 |
tgtaagttccttcaaggatggaaaaaataatattggtgtagtaaaggaagggaaattaccaacttgattgttttttgcaatgaatttcagtgagtccaac |
12039748 |
T |
|
| Q |
101 |
cttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattcaaggtaaacttaacaagacaatgaa |
200 |
Q |
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| T |
12039747 |
cttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattcaaggtaaacttaacaagacaatgaa |
12039648 |
T |
|
| Q |
201 |
gtaaaccgagccagtcagacaaggtgtgaccattgtaccccacaatgaataacactctcagattcgaaggtggcacaagacagtcaagcgacttctcgtc |
300 |
Q |
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| T |
12039647 |
gtgaaccgaaccagtcagacaaggtgtgaccattgtaccccacaatgaataacactctcagattcgaaggtggcacaatacagtcaagcgacttctcgtc |
12039548 |
T |
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| Q |
301 |
gttgacattgctttctttctcctcctcct |
329 |
Q |
| |
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| T |
12039547 |
gttgacattgctttccttctcctcctcct |
12039519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 11901454 - 11901747
Alignment:
| Q |
1 |
tgtaagttccttcaaggatggaaaaaataatattggtgtagtaaaggaagggaaattaccaactttattgtcttttgcaatgaatttcagtgagtccaac |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||||||||||| ||||| || ||||||||||||||| ||||||| |
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| T |
11901454 |
tgtaagttccttcaaggatggaaaaaacaatattggggtagtagaggaaggggaattaccaacttgattgttttctgcaatgaatttcagagagtccagt |
11901553 |
T |
|
| Q |
101 |
cttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattcaaggtaaacttaacaagacaatgaa |
200 |
Q |
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| T |
11901554 |
ctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagtcgttcaaggtaaacttaacaagacactgga |
11901653 |
T |
|
| Q |
201 |
gtaaaccgagccagtcagacaaggtgtgaccattgtaccccacaatgaataacactctcagattcgaaggtggcacaagacagtcaagcgactt |
294 |
Q |
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| T |
11901654 |
tggaatggagccagttagacaaggtgtgacgattgtaccccacaatgaatagcgctctcaaattcggatgtggctcaagacaatcaagcaactt |
11901747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 11828874 - 11828618
Alignment:
| Q |
74 |
tttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcat |
173 |
Q |
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|||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
11828874 |
tttgcaataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcat |
11828775 |
T |
|
| Q |
174 |
tcaaggtaaacttaacaagacaatgaagtaaaccgagccagtcagacaaggtgtgaccattgtaccccacaatgaataacactctcagattcgaaggtgg |
273 |
Q |
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||||||||||||||||||| || |||||| || ||||||||| |||||| |||||||| |||||||| |||| |||| |||| |||||| | | |||| |
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| T |
11828774 |
tcaaggtaaacttaacaaggcattgaagtgaagcgagccagttagacaatgtgtgaccgttgtacccgacaactaatagcacttgcagatttggatgtgg |
11828675 |
T |
|
| Q |
274 |
cacaagacagtcaagcgacttctcgtcgtt---gacattgctttctttctcctcctc |
327 |
Q |
| |
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| ||||| |||||||| |||| ||| || |||||||||||||| |||||||| |
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| T |
11828674 |
ctggagacaatcaagcgatttcttgtctttctcgacattgctttcttcgtcctcctc |
11828618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 245
Target Start/End: Complemental strand, 11861004 - 11860835
Alignment:
| Q |
76 |
tgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattc |
175 |
Q |
| |
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|||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| || || ||||| ||| |
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| T |
11861004 |
tgcaatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttc |
11860905 |
T |
|
| Q |
176 |
aaggtaaacttaacaagacaatgaagtaaaccgagccagtcagacaaggtgtgaccattgtaccccacaa |
245 |
Q |
| |
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|||||||| ||| |||| | |||||| || ||||||| | |||||| |||| |||| |||||| |||| |
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| T |
11860904 |
aaggtaaatttaccaaggaattgaagtgaagcgagccaattagacaacatgtggccatggtacccgacaa |
11860835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 76 - 304
Target Start/End: Complemental strand, 11732676 - 11732448
Alignment:
| Q |
76 |
tgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattc |
175 |
Q |
| |
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||||||||||| || || |||||||| ||||| |||||| ||||||||| |||||| | ||| |||||||| ||||||| |||||| || |||||| || |
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| T |
11732676 |
tgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactc |
11732577 |
T |
|
| Q |
176 |
aaggtaaacttaacaagacaatgaagtaaaccgagccagtcagacaaggtgtgaccattgtaccccacaatgaataacactctcagattcgaaggtggca |
275 |
Q |
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||||||||||||||||| || ||||| || ||||||| | ||| |||||| | ||||||||||| |||||||||| ||| ||| ||| | |||||| |
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| T |
11732576 |
aaggtaaacttaacaaggcattgaagcgaatcgagccatttagataaggtgcggccattgtaccctacaatgaatagaactttcaaattgggaggtggtt |
11732477 |
T |
|
| Q |
276 |
caagacagtcaagcgacttctcgtcgttg |
304 |
Q |
| |
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||||| ||||| |||||||||||||| |
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| T |
11732476 |
ggagacattcaagtaacttctcgtcgttg |
11732448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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