View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16747_low_5 (Length: 322)

Name: NF16747_low_5
Description: NF16747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16747_low_5
NF16747_low_5
[»] chr2 (1 HSPs)
chr2 (14-306)||(26685120-26685412)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 26685120 - 26685412
Alignment:
Q  14 atcagtgataaatagtccaggtttcccatatgaaaatgtaggtggaatattagccttaggctttagacaccattcatttgttgacaatgctggtctaaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26685120 atcagtgataaatagtccaggtttcccatatgaaaatgtaggtggaatattagccttaggctttagacaccattcatttgttgacaatgctggtctaaaa 26685219  T
Q  114 tttggttcaaaattttcgtattgtcttgttgaccatttgagccacaaaaatgtttcaagctacctaacatttggaacaactcctaaagtcaaattgttga 213  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26685220 tttggttcaaaattttcctattgtcttgttgaccatttgagccacaaaaatgtttcaagctacctaacatttggaacagctcctaaagtcaaattgttga 26685319  T
Q  214 gtgaaatcaaaagaacagatatgcttttgtatcaaccattttatggtgtgaatgttaccggcatctccatcgacgatcaaatgctgaaaatcc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26685320 gtgaaatcaaaagaacagatatgcttttgtatcaaccattttatggtgtgaatgttaccggcatctccatcgacgatcaaatgctgaaaatcc 26685412  T

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