View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_11 (Length: 451)
Name: NF16748_high_11
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 24774078 - 24773655
Alignment:
| Q |
16 |
ttaagtacttcttgcatttgttttctagaaagagttgcgaattggatatgccgagcagactctcttatctgcattgggccaagctgcagtgtacactgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24774078 |
ttaagtacttcttgcatttgttttctagaaagagttgcgaattggatatgccgagcagactctcttatctgcattgggccaagctgcagtgtacactgaa |
24773979 |
T |
|
| Q |
116 |
gaacattctaaaccgcctcctggaattcagtctcctttagaagaggtaagccatctaatgagattgggaaaattgaaatatttgtttcggctttaaacct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
24773978 |
gaacattctaaaccgcctcctggaattcagtctcctttagaagaggtaagccatctaatgagattaggaaatctgaaatatttgtttcggctttaaacct |
24773879 |
T |
|
| Q |
216 |
ttgaggtgcatcatctctaaaagtttcagattgggatcttctatgaaaatggtgtcagtgcattatcattgtcggtgcattatagtgatgataccaactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773878 |
ttgaggtgcatcatctctaaaagtttcagattgggatcttctatgaaaatggtgtctgtgcattatcattgtcggtgcattatagtgatgataccaactt |
24773779 |
T |
|
| Q |
316 |
ttactcgaagagactcattttttcacttccggtttctttttgcatcaggctacgaagattgtcaaacaggcctattctgttctccctgattatgacaaaa |
415 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773778 |
ttactcgaagagactctttttttcacttccggtttctttttgcatcaggctacaaagattgtcaaacaggcctattctgttctccctgattatgacaaaa |
24773679 |
T |
|
| Q |
416 |
taatatctgcaatgcttactgatg |
439 |
Q |
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|||||||||||||||||||||||| |
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| T |
24773678 |
taatatctgcaatgcttactgatg |
24773655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 21000464 - 21000579
Alignment:
| Q |
50 |
ttgcgaattggatatgccgagcagactctcttatctgcattgggccaagctgcagtgtacactgaagaacattctaaaccgcctcctggaattcagtctc |
149 |
Q |
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||||||||||||||||| ||||| ||||||||| |||| || ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
21000464 |
ttgcgaattggatatgctgagcaaactctcttaactgccttaggccaagctgctgtgtacactgaagaacattctaaaccacctcctgaaattcagtctc |
21000563 |
T |
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| Q |
150 |
ctttagaagaggtaag |
165 |
Q |
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|||| ||||||||||| |
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| T |
21000564 |
cttttgaagaggtaag |
21000579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 20990285 - 20990425
Alignment:
| Q |
26 |
cttgcatttgttttctagaaagagttgcgaattggatatgccgagcagactctcttatctgcattgggccaagctgcagtgtacactgaagaacattcta |
125 |
Q |
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|||| |||||||||| ||| | | ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||| |||| ||||| ||||||| |
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| T |
20990285 |
cttggatttgttttccagacaaaattgcgaattggatatgctgagcaaactctcttggctgcattaggccaagctgcagtgcacacagaagagcattcta |
20990384 |
T |
|
| Q |
126 |
aaccgcctcctggaattcagtctcctttagaagaggtaagc |
166 |
Q |
| |
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| T |
20990385 |
acccgcctccaggaattaagtctcctttagaagaggtaagc |
20990425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 20990526 - 20990594
Alignment:
| Q |
348 |
tttctttttgcatcaggctacgaagattgtcaaacaggcctattctgttctccctgattatgacaaaat |
416 |
Q |
| |
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|||| ||||||||||||| | |||||||| ||| | | |||||||||||| || |||||||||||||| |
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| T |
20990526 |
tttcattttgcatcaggcagcaaagattgttaaaaaagtctattctgttcttcccgattatgacaaaat |
20990594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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