View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_16 (Length: 404)
Name: NF16748_high_16
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 7787132 - 7787514
Alignment:
| Q |
1 |
agaaacgcacactacaaaaagtgaaggnnnnnnnnntcattttgtccacataattcatctcgagagagggacaatcgacggcaacagcatgtgannnnnn |
100 |
Q |
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| T |
7787132 |
agaaacgcatactacaaaaagtgaaggaaaaaaaaatcattttgtccacataattcatctcgagagagggacaatcgacggcaacaccatgtgatttttt |
7787231 |
T |
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| Q |
101 |
nagggggacaacataatttggtggatcaaacatacagctgaaatgtaagtatacaacaaatactctcaaacatcagtgcataaataagtaaattaaaaac |
200 |
Q |
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| T |
7787232 |
tagggcgacaacataatttggtggatcaaacatacagctgaaatgtaagtatacaacaaatactctcaaacatcagtgcataaataagtaaattaaaaac |
7787331 |
T |
|
| Q |
201 |
atccgaagaatgccattcaactatcgaatttaa-tgtaaacagagaaggagattgctttctgtaacatcgcaaccgagcaagatgccaatggattcaagg |
299 |
Q |
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| T |
7787332 |
atccgaagaatgccattcaactatagaatttaaatgtaaacagagaaggagattgttttctgtaacatcgcaaccgagcaagatgccaatggattcaagg |
7787431 |
T |
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| Q |
300 |
taataagttgcaaaaacaagtaacagtgcaagattcaccagggtccgataaaacctcaagactcaaagacgtactgatatata |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7787432 |
taataagttgcaaaaacaagtaacagtgcaagattcaccagggtccgataaaacctcaagactcaaagacgtactgatatata |
7787514 |
T |
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