View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_26 (Length: 283)
Name: NF16748_high_26
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_26 |
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| [»] scaffold0707 (1 HSPs) |
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Alignment Details
Target: scaffold0707 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 3060 - 2794
Alignment:
| Q |
1 |
agtggttattcaagctcttttgagattcgtattgaaataaatttaaaatagtgtttgaatgtcatacttattttcatagttgtttcttgcttagcaagat |
100 |
Q |
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| T |
3060 |
agtggttaatcaagctcttttgagattcgtattgaaataaatttaaaatattgtttgaatgtcatacttattttcataattgtttcttgcttagcaagat |
2961 |
T |
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| Q |
101 |
agactaaaccagtatagattgatcttggaatcgtaagattaaactcaaaagcaatgaaaacagtatcaaaacatgaagaaaactgcaaaactcttcataa |
200 |
Q |
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| T |
2960 |
agactaaaccagtatagattgatcttggaatcgtaagattaaactcaaaagcaatgaaaacagtatcaacacatgaagaaaactgcaaaactcttcataa |
2861 |
T |
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| Q |
201 |
aatcataaggaaaaagctgtctccgaatatggaggtacaagattagatacttgttgcttacaaaatt |
267 |
Q |
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| T |
2860 |
aatcataaggaaaaagctgtctccgaatatggaggtacaagatttgatacttgttgcttacaaaatt |
2794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 33566669 - 33566403
Alignment:
| Q |
1 |
agtggttattcaagctcttttgagattcgtattgaaataaatttaaaatagtgtttgaatgtcatacttattttcatagttgtttcttgcttagcaagat |
100 |
Q |
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| T |
33566669 |
agtggttaatcaagctcttttgagattcgtattgaaataaatttaaaatattgtttgaatgtcatacttattttcataattgtttcttgcttagcaagat |
33566570 |
T |
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| Q |
101 |
agactaaaccagtatagattgatcttggaatcgtaagattaaactcaaaagcaatgaaaacagtatcaaaacatgaagaaaactgcaaaactcttcataa |
200 |
Q |
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| T |
33566569 |
agactaaaccagtatagattgatcttggaatcgtaagattaaactcaaaagcaatgaaaacagtatcaacacatgaagaaaactgcaaaactcttcataa |
33566470 |
T |
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| Q |
201 |
aatcataaggaaaaagctgtctccgaatatggaggtacaagattagatacttgttgcttacaaaatt |
267 |
Q |
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| T |
33566469 |
aatcataaggaaaaagctgtctccgaatatggaggtacaagatttgatacttgttgcttacaaaatt |
33566403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 33559452 - 33559399
Alignment:
| Q |
163 |
gtatcaaaacatgaagaaaactgcaaaactcttcataaaatcataaggaaaaag |
216 |
Q |
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| T |
33559452 |
gtatcaacacatgaagaaaattgtaaaactcttcataaaatcataagcaaaaag |
33559399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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