View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_28 (Length: 271)
Name: NF16748_high_28
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_28 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 111801 - 111536
Alignment:
| Q |
1 |
cacttgtcactgattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaacgagaaaaatattaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
111801 |
cacttgtcactgattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaatgagaaaaatattaact |
111702 |
T |
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| Q |
101 |
taacaactaataaagaatac------attaacaatacactaattatttattcatagcatgatttgatgatacataaaagtggatatgagctcatttcata |
194 |
Q |
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| T |
111701 |
taacaactaataaagaataccagctgattaataattaac-aatacactaatcatagcatgatttgatgatatatacaggtggatatgagctcatttcata |
111603 |
T |
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| Q |
195 |
tggaaagaatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttg |
261 |
Q |
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| T |
111602 |
tggaaagaatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttg |
111536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 41143510 - 41143775
Alignment:
| Q |
1 |
cacttgtcactgattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaacgagaaaaatattaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41143510 |
cacttgtcactgattcgactcctacaacatgggttgagtagttaaaggagttgaagaataagaattcaacaaattcagttgaatgagaaaaatattaact |
41143609 |
T |
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| Q |
101 |
taacaactaataaagaatac------attaacaatacactaattatttattcatagcatgatttgatgatacataaaagtggatatgagctcatttcata |
194 |
Q |
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|||||||||||||||||||| ||||| ||| || ||| || ||||||||||||||||||||| ||| | |||||||||||||||||||||| |
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| T |
41143610 |
taacaactaataaagaataccagctgattaataattaac-aatacactaatcatagcatgatttgatgatatatacaggtggatatgagctcatttcata |
41143708 |
T |
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| Q |
195 |
tggaaagaatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41143709 |
tggaaagaatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttg |
41143775 |
T |
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