View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_3 (Length: 558)
Name: NF16748_high_3
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 44040843 - 44041385
Alignment:
| Q |
1 |
gtactatatatgacagactgaggagaagtctctcaaagatagcgaatctccaggtaaatgtcacaactcacaatgtatcaattttgttctgaattcaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44040843 |
gtactatatatgacagactgaggagaagtctctcaaagttagcgaatctccaggtaaatgtcacaactcacaatgtatcaattttgttccgaattcaagt |
44040942 |
T |
|
| Q |
101 |
tatttttgttgtgtttctcannnnnnnctgtatggccttgcagtgagagcagcaaagttcattgttcgggaaaattggattatcgcggcaactgatgaca |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44040943 |
tatttttgttgtgtttctcatttttttctgtttggccttgcagtgagagcagcaaagttcattgttcgggaaaattggattatcgcggcaactgatgaca |
44041042 |
T |
|
| Q |
201 |
aatatattcgcgtctacaattatgagaaaatggaaaagataatagaatttgaggcacataaagattatattaggagtttggctgttcatccatttctacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44041043 |
aatatattcgcgtctacaattatgagaaaatggaaaagataatagaatttgaggcacataaagattatattaggagtttggctgttcatccatttctacc |
44041142 |
T |
|
| Q |
301 |
atatgtggtatcggcttctgatgatcaagtcttgaagttgtggaattggaagaaaggttggtcttgtgatgagacttttgaagggaactcacattatgtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44041143 |
atatgtggtatcggcttctgatgatcaagtcttgaagttgtggaattggaaaaaaggttggtcttgtgatgagacttttgaagggaactcacattatgtt |
44041242 |
T |
|
| Q |
401 |
atgcaagtggcatttaatcccaaggatccatctacctttgccagtgcatccctcgatggaactttaaaggtatcttaaccgaaaatcctcaactgtaatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44041243 |
atgcaagtggcatttaatcccaaggatccatctacctttgccagtgcatccctcgatggaactttaaaggtatcttaaccgaaaatcctcaactgtaatt |
44041342 |
T |
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| Q |
501 |
cttatggtcaagggctcaaggctagcgtcataatcctcgatat |
543 |
Q |
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| T |
44041343 |
cgtatggtcaagggctcaaggctagcgtgatgatcctcgatat |
44041385 |
T |
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