View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_33 (Length: 256)
Name: NF16748_high_33
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 34759871 - 34759642
Alignment:
| Q |
17 |
aaattttgacgacatggaccattcttcgaacaagataagnnnnnnntgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatc |
116 |
Q |
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| T |
34759871 |
aaattttgacgacatggaccattcttcgaacaagataagaaaaaaatgctttgtagactttgtcgatagggtacttattgatctgaatagtgcgcagatc |
34759772 |
T |
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| Q |
117 |
ggaagtttttctctttcaatgttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtct |
216 |
Q |
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| T |
34759771 |
ggaagtttttctctttcaatgttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtct |
34759672 |
T |
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| Q |
217 |
atttgcaggaaaaaatatttgcgtcctttg |
246 |
Q |
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| T |
34759671 |
atttgcaggaaaaaatatttgcgtcctttg |
34759642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 34747388 - 34747228
Alignment:
| Q |
63 |
tgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctttcaatgttagagaaatataattcttcttata |
162 |
Q |
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| T |
34747388 |
tgctttgtagactttgtagatagggtactgcttcgactgaatagtgaacacatccgaagtttttctcttaaaatgtccgagaagtatgactcttcctata |
34747289 |
T |
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| Q |
163 |
ttgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgca |
223 |
Q |
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| T |
34747288 |
ttaacaagtggatatccatcgttataaatctgagagtcagaaagcttcgcgtctatttgca |
34747228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 34752021 - 34751954
Alignment:
| Q |
64 |
gctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctt |
131 |
Q |
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| T |
34752021 |
gctttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctctt |
34751954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 34751902 - 34751849
Alignment:
| Q |
168 |
aagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttg |
221 |
Q |
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| T |
34751902 |
aagtggatatctgtggttgtaaatctgagagtcagaaatctttgtatctatttg |
34751849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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