View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16748_high_34 (Length: 256)
Name: NF16748_high_34
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 46629860 - 46629628
Alignment:
| Q |
18 |
gatactttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629860 |
gatactttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcc |
46629761 |
T |
|
| Q |
118 |
tcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtccgactgttcttcccaggttcgacacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629760 |
tcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtccgactgttcttcccaggttcgacacca |
46629661 |
T |
|
| Q |
218 |
agcctagtaaggtctcccttcttgttaccaatc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46629660 |
agcctagtaaggtctcccttcttgttaccaatc |
46629628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 46643124 - 46643358
Alignment:
| Q |
18 |
gatactttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcc |
117 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||| || | | ||||||||||||||||| ||||||| |
|
|
| T |
46643124 |
gatacattggttgctcagagtgccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcc |
46643223 |
T |
|
| Q |
118 |
tcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtcc---gactgttcttcccaggttcgaca |
214 |
Q |
| |
|
||||||||| ||||| | ||||||||| ||||||| |||||||| || |||||||||| |||||||||| | || |||||||||||| |||||| || |
|
|
| T |
46643224 |
tcctgtcaaggattgaattatatcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacg |
46643323 |
T |
|
| Q |
215 |
ccaagcctagtaaggtctcccttcttgttaccaat |
249 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
46643324 |
tcaagcctagtaaggtctcccttctccttaccaat |
46643358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 46637679 - 46637451
Alignment:
| Q |
18 |
gatactttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcc |
117 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| | || ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
46637679 |
gatactttggttgctcagagtgccaacctcttcccagcaagcggggccaaacagcttcccagaagagatcattacttttggttttgctcagccgaaa--- |
46637583 |
T |
|
| Q |
118 |
tcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacg-tccgactgttcttcccaggttcgacacc |
216 |
Q |
| |
|
|||||||||| |||| | ||| ||||| ||||||||||||||||||||||||||| |||||||| ||||| | | || || |||||||||||| | || |
|
|
| T |
46637582 |
tcctgtcaaatattgaattatctcactaagtccaagagaagacaaagatttgcaagctggtgctggaaacgcttcaac-gtccttcccaggttccatgcc |
46637484 |
T |
|
| Q |
217 |
aagcctagtaaggtctcccttcttgttaccaat |
249 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |
|
|
| T |
46637483 |
aagcctagtgaggtctcccttctccttaccaat |
46637451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 46618973 - 46618745
Alignment:
| Q |
18 |
gatactttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcc |
117 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
46618973 |
gatactttggttgctcagagtgccaacctcttgccagtaagcggggccaaacagcctcccagaagagatcattacttttggttttgctcagccgaaa--- |
46618877 |
T |
|
| Q |
118 |
tcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtccgactgttcttcccaggttcgacacca |
217 |
Q |
| |
|
|||||||||| |||| | ||| ||||| ||||||||||||||||||| |||||||| |||| ||| |||| || || |||||||||||| | ||| |
|
|
| T |
46618876 |
tcctgtcaaatattgaattatctcactaggtccaagagaagacaaagctttgcaagctggtactggcaacgcttgaacgtccttcccaggttccatgcca |
46618777 |
T |
|
| Q |
218 |
agcctagtaaggtctcccttcttgttaccaat |
249 |
Q |
| |
|
| |||||||||||||||| ||| |||||||| |
|
|
| T |
46618776 |
atcctagtaaggtctcccatctccttaccaat |
46618745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 46176500 - 46176561
Alignment:
| Q |
18 |
gatactttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccag |
79 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| | ||||| |||||||||||||||||| |
|
|
| T |
46176500 |
gatactttggttgctcagagtgccaacctcttgccaacaagcggggccaaacagcttcccag |
46176561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 46176561 - 46176602
Alignment:
| Q |
122 |
gtcaaagattgtaatatatcactcggtccaagagaagacaaa |
163 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
46176561 |
gtcaaagattgtattatttcactcggtccaagagaagacaaa |
46176602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 15769543 - 15769773
Alignment:
| Q |
22 |
ctttgtttgctcagagtgccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcctcct |
121 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
15769543 |
ctttggttgctcagagtgccaacctcttgccagtaagcgaggccaaacagcttcccagaagagatcattacatttggttttgctcagccgaaaccctcca |
15769642 |
T |
|
| Q |
122 |
gtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacg---tccgactgttcttcccaggttcgacaccaa |
218 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||| | |||||||||||| |||| |||||||||| |
|
|
| T |
15769643 |
gtcaaagattgtattatatcactaagtccaagagaagacaaagctttgcaagttggtgctaaaaacgccttacgactgttcttcacaggctcgacaccaa |
15769742 |
T |
|
| Q |
219 |
gcctagtaaggtctcccttcttgttaccaat |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
15769743 |
gcctagtaaggtctcccttctccttaccaat |
15769773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University