View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_35 (Length: 252)
Name: NF16748_high_35
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34436041 - 34436273
Alignment:
| Q |
1 |
ccttgatttgaagctatgattatttcttggttgaacttaagctctagttagttgtgccaacaattaattgttccaaaaaagagtttcgatttcggaaatg |
100 |
Q |
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| T |
34436041 |
ccttgatttgaagctatgattttttcttggttgaacataagctctagttagttgtgccaacaattaattgttccaaaaaagagtttcgatttcggaaatg |
34436140 |
T |
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| Q |
101 |
gaagtaacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacct |
200 |
Q |
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| T |
34436141 |
gaagtaacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacct |
34436240 |
T |
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| Q |
201 |
gaagaaatcatgaaaatatttgaataaatctct |
233 |
Q |
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| T |
34436241 |
gaagaaatcatgaaaatatttgaataaatctct |
34436273 |
T |
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Back To:
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 30666466 - 30666560
Alignment:
| Q |
106 |
aacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacct |
200 |
Q |
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| T |
30666466 |
aactcacttgattcccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacct |
30666560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 6854028 - 6854096
Alignment:
| Q |
109 |
ttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctcccca |
177 |
Q |
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| T |
6854028 |
ttacctgattcccatcttggcaaatacaagctcacattgaaatgactttccttgacctttgcctcccca |
6854096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 45484597 - 45484665
Alignment:
| Q |
130 |
aaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaac |
198 |
Q |
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||||| ||| |||| ||| |||| ||| |||||||||||||| ||||| ||||||||||| | |||||| |
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| T |
45484597 |
aaagataagttcagtttgaaaagttttaccttgacctttaccaccccaaataccaagaattaaaggaac |
45484665 |
T |
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