View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16748_high_5 (Length: 538)
Name: NF16748_high_5
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 37429807 - 37429269
Alignment:
| Q |
1 |
ctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429807 |
ctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaatcactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaat |
37429708 |
T |
|
| Q |
101 |
cttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37429707 |
cttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacaccg |
37429608 |
T |
|
| Q |
201 |
ccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatcttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37429607 |
ccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatgctgttcttcctctatcttt |
37429508 |
T |
|
| Q |
301 |
gtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccacca-----ttattttcaaacctcacacacctcacta |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37429507 |
gtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattattttcaaacctcacacacctcacta |
37429408 |
T |
|
| Q |
396 |
cctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttccttt----aataacc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
37429407 |
cctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagtattttcctttaataaataacc |
37429308 |
T |
|
| Q |
492 |
taataggccaagttccatcatcattgtttcatctcactc |
530 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37429307 |
taacaggccaagttccatcatcattgtttcatctaactc |
37429269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37697777 - 37697462
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37697777 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37697678 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| | ||||||||| ||||||||||| | |||||||||||||| | |||| ||||| || ||||| |
|
|
| T |
37697677 |
ggtacttagacctctcttacactgctttctcaggtgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattt |
37697578 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||| | || || || || | ||| || ||| |||||||| |||||||| ||||| |
|
|
| T |
37697577 |
tgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttca |
37697478 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37697477 |
aacctcaaacacctca |
37697462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37824885 - 37824570
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37824885 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37824786 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
|||||||||||||||| | | |||| || || | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |
|
|
| T |
37824785 |
ggtacttggacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattt |
37824686 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||||||||| | || ||||| || || || ||| |||||||| |||||||| ||||| |
|
|
| T |
37824685 |
tgatgggattgttcctctatctttgtggaacctcacccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttca |
37824586 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37824585 |
aacctcaaacacctca |
37824570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 77 - 392
Target Start/End: Original strand, 37399982 - 37400297
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37399982 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37400081 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
||||||||| |||||| | | |||| || || | |||||||||||||||||||||| | |||||||||||||| | |||| ||||| || ||||| |
|
|
| T |
37400082 |
ggtacttggtcctctcttcctctgctttttcaggtgaaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaattt |
37400181 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| ||||||||| | || ||||| || ||| || ||| |||||||| |||||||| ||||| |
|
|
| T |
37400182 |
agatgggatggttcctctatctttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttca |
37400281 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37400282 |
aacctcaaacacctca |
37400297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37534090 - 37533775
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| | |||||| |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37534090 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37533991 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
||||||||| |||||| | | |||| || || | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| ||| ||||| |
|
|
| T |
37533990 |
ggtacttggtcctctctttctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattt |
37533891 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| ||||||||| | || || || || ||| || ||| |||||||| |||||||| ||||| |
|
|
| T |
37533890 |
tgatggaatggttcctctatctttgtggaacctcacccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttca |
37533791 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37533790 |
aacctcaaacacctca |
37533775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37640862 - 37640547
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37640862 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37640763 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
|||||||| ||||| | |||| ||||| | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |
|
|
| T |
37640762 |
ggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaattt |
37640663 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| ||||||||| | || ||||| || ||| || ||| ||||||||| |||||||| ||||| |
|
|
| T |
37640662 |
agatgggatggttcctctatctttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttca |
37640563 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37640562 |
aacctcaaacacctca |
37640547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37712614 - 37712299
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37712614 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37712515 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
||||||||| |||||| | | |||| || || | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |
|
|
| T |
37712514 |
ggtacttggtcctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattt |
37712415 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||| ||||||||| | || ||||| || || || ||| |||||||| |||||||| ||||| |
|
|
| T |
37712414 |
tgatgggatggttcctctatctttgtggaatctcacccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttca |
37712315 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37712314 |
aacctcaaacacctca |
37712299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37436697 - 37436382
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37436697 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaa |
37436598 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
|||||||| ||||| | |||| ||||| | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||| | || ||||| |
|
|
| T |
37436597 |
ggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattt |
37436498 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||| | || ||||| || | || || ||| |||||||| |||||||| ||||| |
|
|
| T |
37436497 |
tgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttca |
37436398 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
37436397 |
aacccctcacacctca |
37436382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 37703658 - 37703343
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | |||||||| || ||| | |||||||||| |||||||| |||||||||||| |||| |||| |
|
|
| T |
37703658 |
agtgacatcctctctttacctaatcttcaaagattggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctctaa |
37703559 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
| |||||| ||||||| | | |||| || || | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |
|
|
| T |
37703558 |
gatacttgaacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcacattgcaattt |
37703459 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttca |
376 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||| ||||||||| | || ||||| || ||| || ||| |||||||| |||||||| ||||| |
|
|
| T |
37703458 |
agatgggatggttcctctatctttgtggaatctcacccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttca |
37703359 |
T |
|
| Q |
377 |
aacctcacacacctca |
392 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
37703358 |
aacctcaaacacctca |
37703343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 77 - 322
Target Start/End: Original strand, 37392131 - 37392373
Alignment:
| Q |
77 |
agtgacatcctctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaa |
176 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||||| |||||| ||||| || ||||||||| || |||||||||||||| |||| |
|
|
| T |
37392131 |
agtgccatcctctctttacctaatcttcaaagactagatttgtcaaataatgaa---cttagcggtaaacttccaaaatcaaactggagcactcctctaa |
37392227 |
T |
|
| Q |
177 |
ggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaattt |
276 |
Q |
| |
|
||||||||||||| || || | ||||| | |||||||||| | || |||||| |||||||||||||||| || |||| ||||||| | || ||||| |
|
|
| T |
37392228 |
ggtacttggacctatctggcatcactttctcaggtgaaattcccaaatctataggccatttgaagtatcttactcaattagtcctttcatattgcaattt |
37392327 |
T |
|
| Q |
277 |
ctatggtgttcttcctctatctttgtggaacctcactcaactaaca |
322 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37392328 |
agatgggatggttcctctatctttgtggaacctcactcaactaaca |
37392373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 322
Target Start/End: Complemental strand, 37595385 - 37595069
Alignment:
| Q |
2 |
tgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatc |
101 |
Q |
| |
|
|||||| |||||| || ||||||||||| ||||| |||| || |||||| ||||||| |||||| || |||||||||||||||||||| |||| |
|
|
| T |
37595385 |
tgctaaagaatttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtca----agtgacatcctctctttacctaatc |
37595290 |
T |
|
| Q |
102 |
ttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgc |
201 |
Q |
| |
|
||||| | | |||||||| |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| ||||| | |||| |
|
|
| T |
37595289 |
ttcaaagattggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgc |
37595190 |
T |
|
| Q |
202 |
cttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttg |
301 |
Q |
| |
|
|| || | ||||||||| ||||||||||| | |||||||||||||| | |||| ||||| || |||| |||| | |||||||||||||| |
|
|
| T |
37595189 |
tttttcaggtgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgccatttagatgggatggttcctctatctttg |
37595090 |
T |
|
| Q |
302 |
tggaacctcactcaactaaca |
322 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
37595089 |
tggaacctcacccaactaaca |
37595069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 37412512 - 37412600
Alignment:
| Q |
143 |
aaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccatagg |
231 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||||| | ||| ||||| | ||||||||| ||||||||||| |
|
|
| T |
37412512 |
aaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg |
37412600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 525
Target Start/End: Complemental strand, 37594932 - 37594866
Alignment:
| Q |
459 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37594932 |
aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatct |
37594866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 37381583 - 37381670
Alignment:
| Q |
155 |
tccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagt |
242 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| ||| | ||||| | ||||||||| |||||||||||| | ||||||| |
|
|
| T |
37381583 |
tccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcaggtgaaattccttattccataggccagttgaagt |
37381670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 525
Target Start/End: Original strand, 37400364 - 37400430
Alignment:
| Q |
459 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37400364 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37400430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 525
Target Start/End: Complemental strand, 37697395 - 37697329
Alignment:
| Q |
459 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37697395 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37697329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 525
Target Start/End: Complemental strand, 37824503 - 37824437
Alignment:
| Q |
459 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37824503 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37824437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 525
Target Start/End: Original strand, 37412657 - 37412894
Alignment:
| Q |
288 |
ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca |
387 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| | || ||||| || |||||| ||| ||||| || ||| ||||| ||||||| ||| |||| |
|
|
| T |
37412657 |
ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca |
37412756 |
T |
|
| Q |
388 |
cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat |
487 |
Q |
| |
|
|||||| ||| | ||||| | | ||| ||| | |||| |||||| | || ||||||| ||||||| |||||||| |||||| |||||| ||| |
|
|
| T |
37412757 |
tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac |
37412856 |
T |
|
| Q |
488 |
aacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
||| | | ||| ||| |||| ||||||||||| ||||| |
|
|
| T |
37412857 |
aacattacaggtcaaattccctcatcattgttccatct |
37412894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 37712223 - 37712166
Alignment:
| Q |
468 |
atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37712223 |
atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37712166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 525
Target Start/End: Complemental strand, 37533690 - 37533642
Alignment:
| Q |
477 |
tttcctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37533690 |
tttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37533642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 37640458 - 37640414
Alignment:
| Q |
481 |
ctttaataacctaataggccaagttccatcatcattgtttcatct |
525 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37640458 |
ctttaacaacctaacaggccaagttccatcatcactttttcatct |
37640414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 16841983 - 16842361
Alignment:
| Q |
10 |
aatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaa |
109 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||| |||||| ||||||| |||||| ||| |||||| |||||||| ||||||||||| | |
|
|
| T |
16841983 |
aatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaaggaaatttgttaag----tgacatactctctttgtcaaatcttcaaaga |
16842078 |
T |
|
| Q |
110 |
ctagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcgg |
209 |
Q |
| |
|
||||||||||| |||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||| | ||||| ||||| | |
|
|
| T |
16842079 |
ctagatttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctcag |
16842178 |
T |
|
| Q |
210 |
atgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacct |
309 |
Q |
| |
|
||||| ||||||||||||| | || |||| |||||| ||||||| ||||||| || ||||| |||| | |||||||||||||||||||||| |
|
|
| T |
16842179 |
gagaaatctcctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacct |
16842278 |
T |
|
| Q |
310 |
cactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
392 |
Q |
| |
|
||||||||||||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
16842279 |
cactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
16842361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 24216839 - 24217025
Alignment:
| Q |
2 |
tgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatc |
101 |
Q |
| |
|
|||||| |||||| || ||||||||||| ||||| |||| || ||||||| ||||||| |||| | |||| ||||||||||||||||||||||| |
|
|
| T |
24216839 |
tgctaaagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaag----tgacatcctctctttaccaaatc |
24216934 |
T |
|
| Q |
102 |
ttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctc |
192 |
Q |
| |
|
||||| ||||||||||||| | ||| | |||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216935 |
ttcaaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctc |
24217025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 24217189 - 24217253
Alignment:
| Q |
356 |
gagattccaccattattttcaaacctcacacacctcactacctttggtcttggaaataataactt |
420 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||| |||| | |||| || ||||||||| |
|
|
| T |
24217189 |
gagatcccatcattactttcaaacctcacacacctcacttccttagatcttcaaattaataactt |
24217253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 2 - 322
Target Start/End: Complemental strand, 14554099 - 14553783
Alignment:
| Q |
2 |
tgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatc |
101 |
Q |
| |
|
|||||| |||||| || ||||||||||| ||||| |||| ||| ||| || ||||||| |||||| |||| |||||| |||||||| ||||||| |
|
|
| T |
14554099 |
tgctaaagaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaaggaaatttgtcaag----tgacatactctctttgccaaatc |
14554004 |
T |
|
| Q |
102 |
ttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgc |
201 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||| |||||||| ||||||||||| ||||| |||||||||||| ||||| ||| |||| |
|
|
| T |
14554003 |
ttcaaaaactagatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgc |
14553904 |
T |
|
| Q |
202 |
cttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttg |
301 |
Q |
| |
|
||||| | ||||||||| ||||||||||| | ||||||| |||||| ||||||| ||||||| | || ||||| |||| | |||||||||||||| |
|
|
| T |
14553903 |
tttctcaggtgaaattccttattccataggtcaattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatctttg |
14553804 |
T |
|
| Q |
302 |
tggaacctcactcaactaaca |
322 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14553803 |
tggaacctcactcaactaaca |
14553783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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