View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_high_9 (Length: 482)
Name: NF16748_high_9
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 22633327 - 22633769
Alignment:
| Q |
19 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633327 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22633426 |
T |
|
| Q |
119 |
aaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgtaatattcaaattcaaaaccttttctttggtgacattca |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
22633427 |
aaaaatagtaattgtaatcgatcaaaaattgaagagagaagttataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgaaattca |
22633526 |
T |
|
| Q |
219 |
gaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633527 |
gaaccacttcttttaccgaactagggttttttatgccaaattcctcgaacagactaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
22633626 |
T |
|
| Q |
319 |
agttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattggatgggtaaacgaattcccacagtgacatttatgttta |
418 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22633627 |
agttatgacaaaagtagctacatcattaacaaatccttgggggagacgtgtaaggataattggatgggtaaaagaattcccacagtgacatttatgttta |
22633726 |
T |
|
| Q |
419 |
tctttataccttgagttggtaatattacgatataagcaaccaa |
461 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
22633727 |
tctttatacgttgagttggtaatattacgatataagcagccaa |
22633769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 22625843 - 22625438
Alignment:
| Q |
19 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22625843 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22625744 |
T |
|
| Q |
119 |
aaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgtaatattcaaattcaaaaccttttctttggtgacattca |
218 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
22625743 |
acaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgacattca |
22625644 |
T |
|
| Q |
219 |
gaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22625643 |
gaaccacttcttttaccgaactagggttttttacgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
22625544 |
T |
|
| Q |
319 |
agttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattggatgggtaaacgaattcccacagtgacatttatgttta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | || |||| ||||||| |||||||||| |||| ||| | ||| |
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| T |
22625543 |
agttatgacaaatgtagctacaccattaacaaatccttgggggagatgtttaagtaaaactggacgggtaaaataattcccacaacgacacttaagatta |
22625444 |
T |
|
| Q |
419 |
tcttta |
424 |
Q |
| |
|
|||||| |
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|
| T |
22625443 |
tcttta |
22625438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 185 - 426
Target Start/End: Complemental strand, 22623363 - 22623121
Alignment:
| Q |
185 |
ttcaaattcaaaaccttttctttggtgacattcagaaccacttcttttactgaactagggtttttt-atgccaaattccttgaacaggctaaagcttgta |
283 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||| |||||||||||| |
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|
| T |
22623363 |
ttcaaatacaaaatcttttctttagtgacattcagaaccacttcttttaccgaactagggtttttttatgccaaactcgttgaacaaactaaagcttgta |
22623264 |
T |
|
| Q |
284 |
tagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattggat |
383 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| || ||| | ||||||||| |||| || |
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| T |
22623263 |
taggcaatacaatttggcttgatagtgagatcatcagttatgacaaaagtagttacaccagtaacaaatccttggcggatatgtttaaggaaaatttgaa |
22623164 |
T |
|
| Q |
384 |
gggtaaacgaattcccacagtgacatttatgtttatctttata |
426 |
Q |
| |
|
||||| |||| ||||| ||||||||| |||||||||||| |
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|
| T |
22623163 |
ctgtaaaagaatgaccacatcgacatttatatttatctttata |
22623121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 23354866 - 23354940
Alignment:
| Q |
41 |
atggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacct |
115 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||||||||||||||||||| |||||| | ||||| ||||||| |
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|
| T |
23354866 |
atggtttcttttctagaaagaaatctgtcagagttgacttggaaagcaaagcacactttaaaagatcgagtacct |
23354940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 23366186 - 23366019
Alignment:
| Q |
188 |
aaattcaaaaccttttctttggtgacattcagaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagt |
287 |
Q |
| |
|
|||| ||||||||||||| | ||||| || |||| || ||| || || ||||| | ||||| ||| |||||||||| || || | ||| |||| |||| |
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|
| T |
23366186 |
aaatgcaaaaccttttctatagtgactttaagaatcatttccttcaccgaacttgtgttttctattccaaattcctggagaagcccaaaacttgcgtagt |
23366087 |
T |
|
| Q |
288 |
caatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcct |
355 |
Q |
| |
|
||||| | |||||| ||||| | |||||||| ||||| ||||| ||||| ||| | |||||||||||| |
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|
| T |
23366086 |
caatagaatttggcatgataatcagatcatcggttattacaaaagtagcaacatcgttaacaaatcct |
23366019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 23366406 - 23366321
Alignment:
| Q |
33 |
ctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
118 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| |||||||| ||||| || | ||||||||| || | || |||||||||||||| |
|
|
| T |
23366406 |
ctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagacttcgacaacaaagaacattttaacaaatcaagtacctata |
23366321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 3733970 - 3734014
Alignment:
| Q |
309 |
tgagatcatcagttatgacaaatgtagctacaccattaacaaatc |
353 |
Q |
| |
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||||||| || ||||||||||| |||||||||||||||| ||||| |
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|
| T |
3733970 |
tgagatcgtccgttatgacaaaagtagctacaccattaagaaatc |
3734014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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