View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16748_low_1 (Length: 635)
Name: NF16748_low_1
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 11 - 620
Target Start/End: Complemental strand, 6411054 - 6410443
Alignment:
| Q |
11 |
cagagaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtcagactttgttgttaacaccctcaaattaat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411054 |
cagagaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtcagactttgttgttaacaccctcaaattaat |
6410955 |
T |
|
| Q |
111 |
atctcaacatggaacacctcaattaagatcgctagttagattacaaaacgatcaaccagagtttaactcctttgatgaagtgctctcacttttcgctggt |
210 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6410954 |
atctcaacatgagacacctcaattaagatcgctagttagattacaaaacgatcaaccagagtttaactcctttgatgaagtgctctcgcttttcgctggc |
6410855 |
T |
|
| Q |
211 |
gaacatccagcgtttccaacaccactagtgattcaaggtatatatcttggtcagaaattcctagtcctaacaatatatttaattatatacacaatcatat |
310 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410854 |
gaacatccagactttccaacaccactagtgattcgaggtatatatcttagtcagaaattcctagtcctaacaatatatttaattatatacacaatcatat |
6410755 |
T |
|
| Q |
311 |
aaaaaacgctcatggatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaattcgcaagggagataattgctggt |
410 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6410754 |
aaaaaaagctcatggatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaattcgcaagagagataattgctggt |
6410655 |
T |
|
| Q |
411 |
gtgaatccaaacgtgatnnnnnnngttgaggtaattaaacttactcgttaaatatttttaagcaagtacaaaagaaataaataaaaaagacaatcatgct |
510 |
Q |
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| T |
6410654 |
gtgaatccaaacgtgataaaaaaagttgaggtaattaaacttaatagttaaatatttttaagcaagtataaaagaaataaataaaaaagacaatcatgct |
6410555 |
T |
|
| Q |
511 |
caattttgatgctacatttaaaattgataactaac--ctcattgcttgctatgtgaaatgtaggatacaaccacaataaacaaaaaacacttggagccat |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410554 |
caattttgatgctacatttaaaattgataactaacctctcattgcttgctatgtgaaatgtaggatacaaccacaataaacaaaaaacacttggagccat |
6410455 |
T |
|
| Q |
609 |
acatgcaggatg |
620 |
Q |
| |
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|||||||||||| |
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| T |
6410454 |
acatgcaggatg |
6410443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 620
Target Start/End: Complemental strand, 6391890 - 6391283
Alignment:
| Q |
11 |
cagagaccgagagtcggagtggatatttttacattccaagagatgaattaatcatccctcagaaatcgtcagactttgttgttaacaccctcaaattaat |
110 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
6391890 |
cagagactgagagtcggagtaactatttttacattccaagagatgaattaattatccctccgaaatcgtcagactttgttgttaacaccatcaaatcaat |
6391791 |
T |
|
| Q |
111 |
atctcaacatggaacacctcaattaagatcgctagttagattacaaaacgatcaaccagagtttaactcctttgatgaagtgctctcacttttcgctggt |
210 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
6391790 |
atctcaatatgagacacctcaattaagatcgctagtaagattacaaaatgatcaagtagagtttaactcctttgatgacgtgctctcgcttttcgctggt |
6391691 |
T |
|
| Q |
211 |
gaacatccagcgtttccaacaccactagtgattcaaggtatatatcttggtcagaaattcctagtcctaacaatatatttaattatatacacaatcatat |
310 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6391690 |
gaacatccaaagttttcaacaccactagtgattcaaggtaaata--ttagtcggaaattcctagtcctaacaatatatttaattatatacacaatcatat |
6391593 |
T |
|
| Q |
311 |
aaaaaacgctcatggatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaattcgcaagggagataattgctggt |
410 |
Q |
| |
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||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
6391592 |
aaagaaagctcatgaatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaatttgcaagggagatgattgctggt |
6391493 |
T |
|
| Q |
411 |
gtgaatccaaacgtgatnnnnnnngttgaggtaattaaacttactcgttaaatatttttaagcaagtacaaaagaaataaataaaaaagacaatcatgct |
510 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||| | |
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|
| T |
6391492 |
gtgaatccaaacgtcatcaaaaaagttggggtaattaaacttaatagttaaatatttttaagcaagtacaaaagaaataaataaaaaagactaccatgtt |
6391393 |
T |
|
| Q |
511 |
caattttgatgctacatttaaaattgataactaacctcattgcttgctatgtgaaatgtaggatacaaccacaataaacaaaaaacacttggagccatac |
610 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
6391392 |
caattttcatgctaaatttataattgataactaacctcattgcttgctatgtcaaatgtagaatacaaccacaataaacaaaaaacacttcgagccatac |
6391293 |
T |
|
| Q |
611 |
atgcaggatg |
620 |
Q |
| |
|
|||||||||| |
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|
| T |
6391292 |
atgcaggatg |
6391283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 283 - 418
Target Start/End: Complemental strand, 6370711 - 6370575
Alignment:
| Q |
283 |
atatatttaattatatacacaatcatataaaaaacgctcatggat-cttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatg |
381 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||| |
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| T |
6370711 |
atatatttaactatatacaaaatcatataaagaaagctcatggattcttttgaaaatttgttactatgagtagaggattatcatgcatggatggctgatg |
6370612 |
T |
|
| Q |
382 |
aggaattcgcaagggagataattgctggtgtgaatcc |
418 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||| |
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| T |
6370611 |
aggaatttgcaagacagatgattgctggtgtgaatcc |
6370575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 6352993 - 6352874
Alignment:
| Q |
296 |
tatacacaatcatataaaaaacgctcatggatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaattcgcaagg |
395 |
Q |
| |
|
|||||| ||||||||||| || || ||||||||||||||||||||||| ||||| || ||| | |||||||| ||||||||||||||| |||||| |
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|
| T |
6352993 |
tatacaaaatcatataaagaaatctaatggatcttttgaaaatttcttaatatgaacagtggaccattctgcatggcagactgatgaggaatttgcaagg |
6352894 |
T |
|
| Q |
396 |
gagataattgctggtgtgaa |
415 |
Q |
| |
|
||||| |||||||| ||||| |
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|
| T |
6352893 |
gagatgattgctggggtgaa |
6352874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 6363730 - 6363675
Alignment:
| Q |
364 |
ctgcatggatgactgatgaggaattcgcaagggagataattgctggtgtgaatcca |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
6363730 |
ctgcatggatgactgatgaggaatttgcaagggagatgattgctggggtgaatcca |
6363675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 7459714 - 7459660
Alignment:
| Q |
364 |
ctgcatggatgactgatgaggaattcgcaagggagataattgctggtgtgaatcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
7459714 |
ctgcatggatgactgatgaggaattcgcaaggcagatgattgctggggtgaatcc |
7459660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 6424663 - 6424566
Alignment:
| Q |
320 |
tcatggatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaattcgcaagggagataattgctggtgtgaatcca |
419 |
Q |
| |
|
||||||||||||||||| ||| || | ||||||| |||| |||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
6424663 |
tcatggatcttttgaaatttt--tattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca |
6424566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 6321964 - 6321909
Alignment:
| Q |
364 |
ctgcatggatgactgatgaggaattcgcaagggagataattgctggtgtgaatcca |
419 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6321964 |
ctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatcca |
6321909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 6332538 - 6332483
Alignment:
| Q |
364 |
ctgcatggatgactgatgaggaattcgcaagggagataattgctggtgtgaatcca |
419 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6332538 |
ctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatcca |
6332483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 6289578 - 6289527
Alignment:
| Q |
368 |
atggatgactgatgaggaattcgcaagggagataattgctggtgtgaatcca |
419 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||| |||||||||||||||||| |
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|
| T |
6289578 |
atggatgactgatgaagaatttacaagagagatgattgctggtgtgaatcca |
6289527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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