View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_12 (Length: 444)
Name: NF16748_low_12
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 128 - 438
Target Start/End: Original strand, 43284542 - 43284852
Alignment:
| Q |
128 |
catgttttggagactaagaagttgaatgatacttgatagagagattatgagttgtacagtccttctaatgc---taattgttaatattggccgttcattt |
224 |
Q |
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| T |
43284542 |
catgttttggagactaaaaagttgaatgataattgatagagagattatgagttgtacagtccttctaatgctaataattgttaatattagccgttcattt |
43284641 |
T |
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| Q |
225 |
tctttttggaacataagcatatagtgaaatcnnnnnnnnnnnnnntattagtgagtcatatatatagtagttggtacatcatgcaaaatacaagggttag |
324 |
Q |
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| T |
43284642 |
tctttttggaacataagcatatagtgaaatcaaaaaagaaaaaaatattactgaatc----atatagtagttggtacatcatgcaaaatacaaggattgg |
43284737 |
T |
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| Q |
325 |
agtgtgacaaagatactttaataagattatgagcaactatatttatttattttttaatatacgacaatacaca--catttctagaaagtaaaaaactttt |
422 |
Q |
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| T |
43284738 |
agtgtgacaaagatactctaacaagattatgagcaaccatatttatttgttttttaatatacgataatacatagtcatttctagaaagtaaaaaac-ttt |
43284836 |
T |
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| Q |
423 |
tacaatatgatacaag |
438 |
Q |
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| T |
43284837 |
tacaatatgatacaag |
43284852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43284415 - 43284474
Alignment:
| Q |
1 |
ccaccactcctttccattcccttttgttccttttcatcatctttacacgcaaacaaagct |
60 |
Q |
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| T |
43284415 |
ccaccactcctttccattcccttttgttccttttcatcatctttacacgcaaacaaagct |
43284474 |
T |
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