View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_13 (Length: 429)
Name: NF16748_low_13
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Complemental strand, 45106960 - 45106545
Alignment:
| Q |
2 |
gcataggtttatatatttaataactatttctataacgattattttgtaatactgatatatata--agtcctttctcttacaaaacttatacaagtttttc |
99 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
45106960 |
gcataggtttatatatctaataactatttctataacgattattttgtaatactgatatatatataattcctttctcttacaaaacttatacaagtttttc |
45106861 |
T |
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| Q |
100 |
tcgattattttagattaaaaagatggtgttcaagttcattcacaattttcttgattaatttgttacatnnnnnnnnnnnnnnnnnngcctgcttgataca |
199 |
Q |
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| T |
45106860 |
tcgattattttggattaaaaagatggtgttcaagttcattcacaattttcttcattaatttgttacataaaaaaagaaagaaaaaagcctgcttgataca |
45106761 |
T |
|
| Q |
200 |
ctagtacggatcggttttgctggttctcaactcctcatattcagaagcacttgctgtagggttttcaccagatcattcaccttcattttgtactcgtcac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45106760 |
ctagtacggatcggttttgctggttctcaactcctcatattcagaagcacttgctgtagggttttcaccagatcattcaccttcattttgtactcgtcac |
45106661 |
T |
|
| Q |
300 |
ccatctgcaagacatcatgttattgcaatgcaaaacaaattgtaataaattttaccttacaatcatgtcatgtcatatttcatggctcttaattttttca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45106660 |
ccatctgcaagacatcatgttattgcaatgcaaaacaaattgtaataaattttaccttacaatcatgtcatgtcatatttcatggctcttaattttttca |
45106561 |
T |
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| Q |
400 |
ccaaccttgttgaaac |
415 |
Q |
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| T |
45106560 |
ccaaccttgttgaaac |
45106545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 45135193 - 45135115
Alignment:
| Q |
245 |
agcacttgctgtagggttttcaccagatcattcaccttcattttgtactcgtcacccatctgcaagacatcatgttatt |
323 |
Q |
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||||||||| ||| |||||||||| |||||||||| || |||||||| | ||||||||||||| |||| ||||||||| |
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| T |
45135193 |
agcacttgccatagagttttcaccaaatcattcaccgtcgttttgtacccttcacccatctgcaggacaccatgttatt |
45135115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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