View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_14 (Length: 412)
Name: NF16748_low_14
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 2570984 - 2570607
Alignment:
| Q |
17 |
tccataagtgtgtgggtttaacccccgtaaaccaactttataaagtaacacatgaacttgtctagactccggtaaatctttttaaaagaaatcaacttat |
116 |
Q |
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| T |
2570984 |
tccataagtgtgtgggtttaacccccgcaaaccaactttataaactaacacatgaacttgtctagactccggtaaatctttttaaaagaaatcaactcat |
2570885 |
T |
|
| Q |
117 |
ggttcaattattcaattgtaatcaggtttgataagtcttattttttcttcttaatataaacacacttgaatagaaggcaaacgaataacaagatgcatcg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || | ||||| || || || |
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| T |
2570884 |
ggttcaattattcaattgtaatcaggtttgataagtcttatttcttcttcttgatataaacacacttgaatagaaggcaagcggacaacaaaatacaccg |
2570785 |
T |
|
| Q |
217 |
ttagaaagaatgtagtaaagagaggcttcttaacactcctcctcctcctactatctctttcaaaattgaaattgtcaatgctaactaatagtattattgt |
316 |
Q |
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||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2570784 |
ttaaaaagaatgtcaaaaagagagacttcttaacactcctcc---tcctactatctctttcaaaattgaaattgtcaatgctaactaatagtattattgt |
2570688 |
T |
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| Q |
317 |
gggacatagccagtaccaaatacgcgtagagaatgattcaaaaggtaggaatagtactactactgctactatagttggggg |
397 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
2570687 |
gggacatagccagtaccaaatacgcgtagagaattattcaaaaggtaggaatagtactgctactactactatagttggggg |
2570607 |
T |
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