View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16748_low_15 (Length: 409)
Name: NF16748_low_15
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 46629526 - 46629123
Alignment:
| Q |
1 |
tgtataacaaatacaagcaaagtgaggacagaaacaaatgatatatataaagaaaaaaggcactgatacgggcataaatgttcaaataa--------tgt |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46629526 |
tgtataacaaatacaagcaaagtgaggacagaaacaaatgatatatataaagaaaaaaggcactgatacgggcataaatgttcaaataaatgttgtatgt |
46629427 |
T |
|
| Q |
93 |
tacaatcaaatgataattcaatcagctactccattgtaattaccattggaatatacatatgaagttcattaacaacagagaggatgggatggcacagttg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46629426 |
tacaatcaaatgataattcaatcagctactccattataattaccattggaatatacatatgaagttcattaacaacagagaggatgggatggcacagttg |
46629327 |
T |
|
| Q |
193 |
aatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttcttcccaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629326 |
aatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttcttcccaa |
46629227 |
T |
|
| Q |
293 |
tcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcccccat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46629226 |
tcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcccccat |
46629127 |
T |
|
| Q |
393 |
ccct |
396 |
Q |
| |
|
|||| |
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|
| T |
46629126 |
ccct |
46629123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 175 - 394
Target Start/End: Original strand, 46643667 - 46643886
Alignment:
| Q |
175 |
gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag |
274 |
Q |
| |
|
|||| |||| ||||||||||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||| || | ||| | |
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|
| T |
46643667 |
gatgagatgtcacagttgaatacctgtaaaaatgtatcttgagattcgtcagagacatgaggaatcaagcgagataatagttcttgttgcctcgctccgg |
46643766 |
T |
|
| Q |
275 |
taaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaa |
374 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46643767 |
caaaaagtttcttccctattatacattttctcccttttaatttcctgcactccgaccatctacaatatccatcagtttcgtaaaactttccatagtaaaa |
46643866 |
T |
|
| Q |
375 |
tgaaagtatttcccccatcc |
394 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
46643867 |
tgtaagtatttcccccatcc |
46643886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 188 - 396
Target Start/End: Complemental strand, 46636657 - 46636449
Alignment:
| Q |
188 |
agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt |
287 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || | |
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|
| T |
46636657 |
agttgaatacctgtgacagagcctcttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg |
46636558 |
T |
|
| Q |
288 |
cccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcc |
387 |
Q |
| |
|
|| ||||||||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
46636557 |
tcctatcatacattttctcccttttttcttcctgcacttcgaccatctaagatatccatcagttttgtaaaactttccatagtaaaatgaaagcatttcc |
46636458 |
T |
|
| Q |
388 |
cccatccct |
396 |
Q |
| |
|
||||||||| |
|
|
| T |
46636457 |
cccatccct |
46636449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 188 - 396
Target Start/End: Complemental strand, 46617959 - 46617751
Alignment:
| Q |
188 |
agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt |
287 |
Q |
| |
|
|||||||||||||| ||| || || ||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || | |
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|
| T |
46617959 |
agttgaatacctgtgacagagcattttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg |
46617860 |
T |
|
| Q |
288 |
cccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcc |
387 |
Q |
| |
|
|| |||||||| |||||||| ||| |||| |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
46617859 |
tcctatcatacactttctcccttttttcttcctgcacttcgaccatctatgatatccatcagttttgtaaaaccttccatagtaaaatgaaagtatttcc |
46617760 |
T |
|
| Q |
388 |
cccatccct |
396 |
Q |
| |
|
||||||||| |
|
|
| T |
46617759 |
cccatccct |
46617751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 175 - 393
Target Start/End: Original strand, 46177017 - 46177235
Alignment:
| Q |
175 |
gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||| || | ||| | ||| || ||||||| |
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|
| T |
46177017 |
gatgagatggcacagttgaatacctgtaacaaagtatcttgcgattcttcagagacatgagtaatcaagcgagacaaaagttcttgttgcctcggtccag |
46177116 |
T |
|
| Q |
275 |
taaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaa |
374 |
Q |
| |
|
||||||||||| || |||||||||| | ||| ||| | || |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| |
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|
| T |
46177117 |
caaaaagtttctgtcctgtcatacatttccccccttttttcctcctgcacttcgaccatctacgatatccttcagttttgtaaaactctccatagtaaaa |
46177216 |
T |
|
| Q |
375 |
tgaaagtatttcccccatc |
393 |
Q |
| |
|
||| ||||| ||||||||| |
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|
| T |
46177217 |
tgagagtatctcccccatc |
46177235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 46637343 - 46637303
Alignment:
| Q |
9 |
aaatacaagcaaagtgaggacagaaacaaatgatatatata |
49 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
46637343 |
aaatataagcaaagtgaggactgaaacaaattatatatata |
46637303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 394
Target Start/End: Original strand, 15770075 - 15770283
Alignment:
| Q |
186 |
acagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttc |
285 |
Q |
| |
|
|||||||||||||||| ||| || |||||| ||||||||||||||||||| |||||||||||| || | ||||| ||| || |||||| ||||||||||| |
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|
| T |
15770075 |
acagttgaatacctgtgacagagtatcttgcgattcttcagatacatgagtaatcaagcgagacaaaagttcatgttgcctcggtccactaaaaagtttc |
15770174 |
T |
|
| Q |
286 |
ttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtattt |
385 |
Q |
| |
|
| || ||||||| ||| | ||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15770175 |
tgtcctatcatacgtttcccccccttttttttcctgcactctgaccatctacgatatccatcagttttgtaaaactttccatagtaaaatgagagtattt |
15770274 |
T |
|
| Q |
386 |
cccccatcc |
394 |
Q |
| |
|
||||||||| |
|
|
| T |
15770275 |
cccccatcc |
15770283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 18376224 - 18376257
Alignment:
| Q |
217 |
gattcttcagatacatgaggaatcaagcgagata |
250 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
18376224 |
gattcttcggatacatgaggaatcaagcgagata |
18376257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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