View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_17 (Length: 402)
Name: NF16748_low_17
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 4616918 - 4616543
Alignment:
| Q |
17 |
gattattggtaagtgtaccaaatcgtcaatcaaagtaataaatttctaagttcatattcagagtttatcttagattgcaattgcataaaagagtaatcaa |
116 |
Q |
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| T |
4616918 |
gattattggtaagtgtaccaaatcgtcaatcaaagtaataaatttctaagttcatattcagagtttatcttagattgcaattgcataaaagagtaatcaa |
4616819 |
T |
|
| Q |
117 |
cgattacatggttcaagctgatcacaaaagtttatctaccatcctaatttaaagaaatcactcatgaataaatcgataacaaagttgcttcaatcttgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4616818 |
cgattacatggttcaagctgatcacaaaagtttatctaccatcctaatttaaagaaatcactcatgaataaattgataacaaagttgcttcaatcttgtt |
4616719 |
T |
|
| Q |
217 |
tcttagttcaatcttcaaccttgacttcctgaaaataaagtttctcagctttgtaaatagagaaagcaaaatcacccaattcagggagtgttgtgtgcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4616718 |
tcttagttcaatcttcaaccttgacttcctgaaaataaagcttctcagctttgtaaatagagaaagcaaaatcacccaattcagggagtgttgtgtgcga |
4616619 |
T |
|
| Q |
317 |
tgcacagtcccaaacttgaacaccctgcgcgatgcgccggtgcttctgtgggatgcacacgaggcgggactgtcct |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
4616618 |
tgcacagtcccaaacttgaacaccctgcgcgatgcgccggtgcttctgtgggatgcacatgaggcgggcctgtcct |
4616543 |
T |
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