View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_18 (Length: 399)
Name: NF16748_low_18
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 178 - 388
Target Start/End: Complemental strand, 692618 - 692408
Alignment:
| Q |
178 |
gtattgtagaatctgacgtggaattgttagaacgttgcatttgcatgtgactgagtagttagatttgtaacgtgcttttggatttttgctcgggaaagtg |
277 |
Q |
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| T |
692618 |
gtattgtagaatctgacgtggaattgttagaacgttgcatttgcatgtgactgagtagttagatttgtaacgtgcttttggatttttgctcgggaaagtg |
692519 |
T |
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| Q |
278 |
gaaaaactttttctgactgnnnnnnnattgcattggaaaatttgaaatcttgttgtgtctgtgtaataatattttagaatttagtttgtaatattaagag |
377 |
Q |
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| T |
692518 |
gaaaaactttttctgactgtttttttattgcattggaaaatttgaaatcttgttgtgtctgtgtaataatattttagaatttagtttgtaatattaagag |
692419 |
T |
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| Q |
378 |
tgacgttgatg |
388 |
Q |
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| T |
692418 |
tgacgttgatg |
692408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 692778 - 692660
Alignment:
| Q |
18 |
gtaatcgcatatatctgacatgtcttcgatgaaaggtgtcggtgctacaaagataatgcgttagtttcttaatctatgttttttgttttcgttaattaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
692778 |
gtaatcgcatatatctgacatgtcttcgatgaaaggtgtcgatgctacaaagaccatgcgttagtttcttaatctatgttttttgttttcgttaattaac |
692679 |
T |
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| Q |
118 |
caacaatcatgttaatgtt |
136 |
Q |
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| T |
692678 |
caacaatcatgttaatgtt |
692660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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