View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_19 (Length: 364)
Name: NF16748_low_19
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_19 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 100 - 350
Target Start/End: Complemental strand, 30014132 - 30013882
Alignment:
| Q |
100 |
ttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggttgtttccttgtgtggctcgctagcttatctcctatagctactgtttgtggtg |
199 |
Q |
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| T |
30014132 |
ttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggctgtttccttgtgtggcttgctagcttatctcctatagctgctgtttgtggta |
30014033 |
T |
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| Q |
200 |
tttttgctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagataactgcatctagtgacgacataatttgttgctta |
299 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
30014032 |
tttttgctgttacagcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagatagctgcatctagtgaggacataatttgttgctta |
30013933 |
T |
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| Q |
300 |
agattctcatccgtaactaaggcatatgaaaagttgttttgagctgttttt |
350 |
Q |
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| T |
30013932 |
agattctcatcagtaactaaggcatgtgaaaagttgttttgagctgttttt |
30013882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 30073599 - 30073466
Alignment:
| Q |
217 |
tgctgatttgttctttttgtaactagttcttttgtttattctgatagataactgcatctagtgacgacataatttgttgcttaagattctcatccgtaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
30073599 |
tgctgatttgttctttttgtaactagttcttttgtttattctgatatatagctgcatctagtgaggatataatttgttgcttaagattctcatcagtaac |
30073500 |
T |
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| Q |
317 |
taaggcatatgaaaagttgttttgagctgttttt |
350 |
Q |
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| T |
30073499 |
taaggcatgtgaaaagttgttttgagctgttttt |
30073466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30014232 - 30014162
Alignment:
| Q |
1 |
tttgatttttctggtggtttttgttatccctgtcatggactgtgttgtttgtgcagtttgtcctagttgct |
71 |
Q |
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| T |
30014232 |
tttgatttttctagtggtttttgttatctctatcgtggactgtgttgtttgtgcggtttgtcctagtagct |
30014162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 8052 - 8348
Alignment:
| Q |
1 |
tttgatttttctggtggtttttgttatccctgtcatggactgtgttgtttgtgcagtttgtcctagttgctaaggtgctatgtggtactgcttgttttct |
100 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
8052 |
tttgatttttctggtggtttttgttatctctgtcgtggactgtgttgtttgtgcggtttgtcctagttgctaaggcgctctgtggtactgcttgttttct |
8151 |
T |
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| Q |
101 |
tttcttcacctgtggtgtccccttctttcgctgatacaaggaggggttgtttccttgtgtggctcgctagcttatctcctatagctactg-tttgtggtg |
199 |
Q |
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| T |
8152 |
tttcttcacctgtggtgtccccttctttcgctgatacaaggaggggctgttt---------gctcgctagcttatctcctatagctgctgatacaaggag |
8242 |
T |
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| Q |
200 |
tttttgctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagataactgcatctagtgacgacataatttgttgctta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
8243 |
---gggctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagatagttgcttctagtgaggacataatttgttgctta |
8339 |
T |
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