View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16748_low_22 (Length: 347)

Name: NF16748_low_22
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16748_low_22
NF16748_low_22
[»] chr5 (26 HSPs)
chr5 (117-325)||(37430130-37430338)
chr5 (1-115)||(37429794-37429908)
chr5 (137-321)||(37704061-37704245)
chr5 (117-274)||(37437074-37437231)
chr5 (117-274)||(37595703-37595860)
chr5 (117-274)||(37712997-37713154)
chr5 (117-274)||(37825268-37825425)
chr5 (117-270)||(37641251-37641404)
chr5 (117-273)||(37534479-37534635)
chr5 (137-274)||(37399451-37399588)
chr5 (137-274)||(37380959-37381096)
chr5 (1-112)||(37399812-37399923)
chr5 (137-307)||(37698186-37698356)
chr5 (3-112)||(37391961-37392070)
chr5 (137-274)||(37411939-37412076)
chr5 (1-104)||(37595373-37595476)
chr5 (1-104)||(37640921-37641024)
chr5 (37-107)||(37703753-37703823)
chr5 (141-274)||(37391585-37391718)
chr5 (1-110)||(37412316-37412425)
chr5 (1-114)||(37712673-37712786)
chr5 (1-114)||(37436756-37436869)
chr5 (1-104)||(37534149-37534252)
chr5 (63-114)||(37381333-37381384)
chr5 (1-104)||(37697836-37697939)
chr5 (1-104)||(37824944-37825047)
[»] chr3 (2 HSPs)
chr3 (137-274)||(14554425-14554562)
chr3 (1-114)||(14554087-14554200)
[»] chr4 (4 HSPs)
chr4 (141-325)||(24216316-24216500)
chr4 (18-110)||(24216748-24216840)
chr4 (137-274)||(16841500-16841637)
chr4 (67-110)||(16841878-16841921)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 117 - 325
Target Start/End: Original strand, 37430130 - 37430338
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37430130 aagatggtgctattggccgctaattcaccgttcagattgttgcaactaaggtccagaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 37430229  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagaggaacagtgagaccaaaaaccaggttgagattaagtgttgataaaaaa 316  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37430230 actcgcagcaatctgtgccggttttccaagattctgtcttgaaagaaaaagaggaacagtgagaccaaaaaccaggttgagatgaagtgttgataaaaaa 37430329  T
Q  317 tgagttctt 325  Q
    ||| |||||    
T  37430330 tgaattctt 37430338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 37429794 - 37429908
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429794 aaattccttagcagcgacaaagatctctctctgattaaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 37429893  T
Q  101 tccatgtgaatggac 115  Q
    ||||||||| |||||    
T  37429894 tccatgtgagtggac 37429908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 37704061 - 37704245
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| ||||||||||||||||| || |||||||||||||| | |||  ||| | |||||||||||||||||||||||||||| |||||||||||     
T  37704061 taattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatcccactcgcaacaatctgtgccg 37704160  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaacagtgagaccaaaaaccaggttgagattaagtgttgataaaaaatgagt 321  Q
    |||||||||||||||||||| |||||||||||  ||||   ||||  |||||| |||| |||| ||||||||| | |||||||||    
T  37704161 gttttccaagattctgtcttaaaagaaaaagacaaacacatagacagaaaaccgggtttagatgaagtgttgacagaaaatgagt 37704245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 37437074 - 37437231
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| ||||||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37437074 aagatggtgctattgggatgtaattcacctttcagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37437173  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
    |||| || |||||||| |   ||| |||||||||||||||||||||||||||| ||||    
T  37437174 actcacaacaatctgtactgttttcccaagattctgtcttgaaagaaaaagagaaaca 37437231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 37595703 - 37595860
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37595703 aagatggtgctattgggatgtaattcacctttaagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37595802  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
    |||| || |||||||| |   ||| |||||||||||||||||||||||||||||||||    
T  37595803 actcacaacaatctgtactgttttcccaagattctgtcttgaaagaaaaagaggaaca 37595860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 37712997 - 37713154
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37712997 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37713096  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
    |||| || |||||||| |   ||| |||||||||||||||||||||||||||||||||    
T  37713097 actcacaacaatctgtactgttttgccaagattctgtcttgaaagaaaaagaggaaca 37713154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 37825268 - 37825425
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37825268 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37825367  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
    |||| || |||||||| |   ||| |||||||||||||||||||||||||||||||||    
T  37825368 actcacaacaatctgtactgttttcccaagattctgtcttgaaagaaaaagaggaaca 37825425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 37641251 - 37641404
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37641251 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37641350  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagagg 270  Q
    |||| || ||||||||     |||||||||||||||||||||||||||||||||    
T  37641351 actcacaacaatctgtattgtttttccaagattctgtcttgaaagaaaaagagg 37641404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 273
Target Start/End: Original strand, 37534479 - 37534635
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37534479 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37534578  T
Q  217 actcgcagcaatctgtgccagttttccaagattctgtcttgaaagaaaaagaggaac 273  Q
    |||| || |||||||| |   ||| ||||||||||||||||||||||||||| ||||    
T  37534579 actcacaacaatctgtactgttttcccaagattctgtcttgaaagaaaaagaagaac 37534635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 37399588 - 37399451
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| || || ||||||||||| ||||||| ||||||||| | |||  ||||| ||||||||||||||||||||||||| || |||||||| |      
T  37399588 taattcaccttttagtttgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatcccactcacaacaatctgtactg 37399489  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
     ||| |||||||||||||||||||||||||||||||||    
T  37399488 ttttcccaagattctgtcttgaaagaaaaagaggaaca 37399451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 37381096 - 37380959
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||||||||| |||  |||||  |||||||||||||||||||||| | || ||||||||   |    
T  37381096 taattcaccattcagattgctgcaactgaggtccagaccaatcacatgatctgacatggagtcgcacgtgacaccatcccacccacaacaatctgtatta 37380997  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
     |||||||||||||| ||||||||||||||| ||||||    
T  37380996 tttttccaagattctatcttgaaagaaaaagtggaaca 37380959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37399923 - 37399812
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||  ||||| || | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37399923 aaattctttagcattgacaaagagctctctctgagggaagacatgttcacaatattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37399824  T
Q  101 tccatgtgaatg 112  Q
    ||||||| ||||    
T  37399823 tccatgtcaatg 37399812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 307
Target Start/End: Original strand, 37698186 - 37698356
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||| |||||  ||    |||| ||||||||||||||||||| ||| ||||||||        
T  37698186 taattcacctttcaaattgttgcaactgaggtccaaaccaatcacgtaatccgactcagtgtcacacgtgacaccatcccacttgcaacaatctgtattg 37698285  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaacagtgagaccaaaaaccaggttgagattaagtgtt 307  Q
     ||||||||||||||||| || ||||||||||||||||   |||||||| | ||||||||||  |||||||    
T  37698286 tttttccaagattctgtcctggaagaaaaagaggaacatctagaccaaatatcaggttgagacgaagtgtt 37698356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 37392070 - 37391961
Alignment:
Q  3 attccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttcttc 102  Q
    |||| ||||||  |||||||| |||||||| || ||| | ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37392070 attctttagcatagacaaagagctctctctaatggaatacatatccactctattcaaatgaagctcccttaaattagtagcattatgaatgagtttcttc 37391971  T
Q  103 catgtgaatg 112  Q
    ||||| ||||    
T  37391970 catgtcaatg 37391961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 37412076 - 37411939
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| || ||||||||||| |||||||||||||||||||||| |||  | | | |||||||| ||||||||| ||||||||| ||||||||   |    
T  37412076 taattcacctttaagattgttgcacctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccataccactcgcaacaatctgtatta 37411977  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
     |||||||||| ||||| || |||||||||||||||||    
T  37411976 tttttccaagaatctgttttcaaagaaaaagaggaaca 37411939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37595373 - 37595476
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| |||||  | || ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37595373 aaattctttagcatggacaaagagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37595472  T
Q  101 tcca 104  Q
    ||||    
T  37595473 tcca 37595476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37640921 - 37641024
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| |||||  | || ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37640921 aaattctttagcattgacaaagagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37641020  T
Q  101 tcca 104  Q
    ||||    
T  37641021 tcca 37641024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 37703753 - 37703823
Alignment:
Q  37 gaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttcttccatgt 107  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37703753 gaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttcttccatgt 37703823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 37391718 - 37391585
Alignment:
Q  141 tcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgccagttt 240  Q
    ||||| |||| |||||||||||| ||||| |   ||||||| | |||  ||||| |||||||||||||||||||||||| ||| |||| ||| |   |||    
T  37391718 tcaccattcaaattgttgcaactgaggtctagttcaatcacgtgatctgacatggtgtcgcacgtgacaccatcccacttgcaacaatttgtactgtttt 37391619  T
Q  241 tccaagattctgtcttgaaagaaaaagaggaaca 274  Q
    ||||||||||||||||||||||||||||||||||    
T  37391618 tccaagattctgtcttgaaagaaaaagaggaaca 37391585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37412425 - 37412316
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||||||||||||  |||||||||| ||||| ||||| ||| |||||| ||||||||| |||||||| ||| ||||| ||||||||| ||    
T  37412425 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacattatgaatgagttcct 37412326  T
Q  101 tccatgtgaa 110  Q
    ||||||||||    
T  37412325 tccatgtgaa 37412316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37712673 - 37712786
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||| ||||| || | |||| ||| ||||| ||| ||||||||||||||||||||| ||||||||||||    
T  37712673 aaattctttagcattgacaaagagctctctctgatggaagacatgttcacattatccaaataaagttcccttaaattagtagcattatgaatgagtttct 37712772  T
Q  101 tccatgtgaatgga 114  Q
    ||||||| ||||||    
T  37712773 tccatgtcaatgga 37712786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37436756 - 37436869
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||| || ||||||||| |||||||  |||||||| || | |||   ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  37436756 aaattcgttaacaacgacaaagagctctctccaattgaagacattttcactccattcagatgaagctcccttaaattagtagcattatgaatgagtttct 37436855  T
Q  101 tccatgtgaatgga 114  Q
    |||||| |||||||    
T  37436856 tccatgcgaatgga 37436869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37534149 - 37534252
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||| ||||| || | |||| ||| ||||| ||| ||||||||||||||||||||| ||||||||||||    
T  37534149 aaattctttagcattgacaaagagctctctctgatggaagacatgttcacattatccaaataaagttcccttaaattagtagcattatgaatgagtttct 37534248  T
Q  101 tcca 104  Q
    ||||    
T  37534249 tcca 37534252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 37381384 - 37381333
Alignment:
Q  63 aagctcccttaaattagtagcattaagaatgagtttcttccatgtgaatgga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  37381384 aagctcccttaaattagtagcattatgaatgagtttcttccatgtcaatgga 37381333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37697836 - 37697939
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  ||||| || ||||||| ||||||||| || | |||   ||| | |||||| ||||||||||||||||||||| ||||||||||||    
T  37697836 aaattctttagcattgacaatgagctctctccgattgaagacatgttcactccattaagatgaagatcccttaaattagtagcattatgaatgagtttct 37697935  T
Q  101 tcca 104  Q
    ||||    
T  37697936 tcca 37697939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37824944 - 37825047
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  ||||| || ||||||| ||||||||| || | |||   ||| | |||||| ||||||||||||||||||||| ||||||||||||    
T  37824944 aaattctttagcattgacaatgagctctctccgattgaagacatgttcactccattaagatgaagatcccttaaattagtagcattatgaatgagtttct 37825043  T
Q  101 tcca 104  Q
    ||||    
T  37825044 tcca 37825047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 14554425 - 14554562
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| |||| |||||||||||||||||| |   ||||||| | | |  | ||| |||||||||||||||||||||||||||| |||||||| |      
T  14554425 taattcaccattcaaattgttgcaactaaggtctagttcaatcacgtgacctgatatggtgtcgcacgtgacaccatcccactcgcaacaatctgtactc 14554524  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
     |||||||||||||||||||||||||||||||| ||||    
T  14554525 tttttccaagattctgtcttgaaagaaaaagagaaaca 14554562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14554087 - 14554200
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||| ||||| || | |||   ||||| || ||| ||||||||||||||||||||| |||||||||| |    
T  14554087 aaattctttagcattgacaaagagctctctctgatggaagacatgttcactccattcagataaagatcccttaaattagtagcattatgaatgagtttat 14554186  T
Q  101 tccatgtgaatgga 114  Q
    ||||||| ||||||    
T  14554187 tccatgtaaatgga 14554200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 141 - 325
Target Start/End: Complemental strand, 24216500 - 24216316
Alignment:
Q  141 tcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgccagttt 240  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||||   || |  |||| ||| |||| |||||||||||||| |||||||  ||| |||    
T  24216500 tcacctttcagattgttgcaactaaggtccagaccaatcacgtaatttgacctagtgtcacacatgaccccatcccactcgcaacaatctgcaccatttt 24216401  T
Q  241 tccaagattctgtcttgaaagaaaaagaggaacagtgagaccaaaaaccaggttgagattaagtgttgataaaaaatgagttctt 325  Q
    |||| ||||| ||| ||||| |||||| ||||||   |||||||| | | |||| |||| ||||||||| || ||||||||||||    
T  24216400 tccaggattccgtcctgaaataaaaagtggaacacatagaccaaatatcgggttcagatgaagtgttgacaacaaatgagttctt 24216316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 24216840 - 24216748
Alignment:
Q  18 caaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttcttccatgtgaa 110  Q
    |||||| |||||||||||||||||||| |||||   |||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24216840 caaagagctctctctgattgaagatatgtccactccattcaggtaaagctcccttaaattagtagcattatgaatgagtttcttccatgtgaa 24216748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 16841637 - 16841500
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgcca 236  Q
    ||||||||| |||| |||||||||||| ||||||||||||| ||| |||||  |     |||| ||||||||||||||||||| ||| ||||| || ||     
T  16841637 taattcacctttcaaattgttgcaactgaggtccaaaccaaccacgtaatctgattcagtgtcacacgtgacaccatcccacttgcaacaatccgtaccg 16841538  T
Q  237 gttttccaagattctgtcttgaaagaaaaagaggaaca 274  Q
     |||||||||||| |||||||||||||  |||||||||    
T  16841537 tttttccaagattttgtcttgaaagaagtagaggaaca 16841500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 16841921 - 16841878
Alignment:
Q  67 tcccttaaattagtagcattaagaatgagtttcttccatgtgaa 110  Q
    |||||||| |||||||||||| |||||||||||||||| |||||    
T  16841921 tcccttaatttagtagcattatgaatgagtttcttccaagtgaa 16841878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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