View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_24 (Length: 318)
Name: NF16748_low_24
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 46927329 - 46927026
Alignment:
| Q |
1 |
gtttgtgttattgaatgatcatcactgaaaatggctcttctactagacaactgtgaaggcattttactctccttagactcacacaaatcagtcccagctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46927329 |
gtttgtgttattgaatgatcatcactgaaaatggctcttctactagacaactgtgaaggcattttactctcattagactcacacaaatcagtcccagctc |
46927230 |
T |
|
| Q |
101 |
cattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcgttgtttggcgtcctcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927229 |
cattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcgttgtttggcgtcctcc |
46927130 |
T |
|
| Q |
201 |
tgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaagcaatcatctcttcatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927129 |
tgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaagcaatcatctcttcatc |
46927030 |
T |
|
| Q |
301 |
atat |
304 |
Q |
| |
|
|||| |
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|
| T |
46927029 |
atat |
46927026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 48170773 - 48170828
Alignment:
| Q |
229 |
tacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaag |
284 |
Q |
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||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |
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| T |
48170773 |
tacttcaaacacagtaatttctctagtttcgttcgacaactcaatacctatgtaag |
48170828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 38334608 - 38334681
Alignment:
| Q |
211 |
agagacctcctccctaactacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaag |
284 |
Q |
| |
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|||||||| || |||| ||||||||||||||||| ||||| || || ||| |||||||||||||||||||||| |
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| T |
38334608 |
agagaccttcttcctagatacttcaaacacaacaatttctcaagttttgttagacaactcaacacctatgtaag |
38334681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 32734717 - 32734770
Alignment:
| Q |
231 |
cttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaag |
284 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
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|
| T |
32734717 |
cttcaaacacaacaatttctctagctttgttcgtcaactcaacacttatgtaag |
32734770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 257
Target Start/End: Complemental strand, 38752261 - 38752089
Alignment:
| Q |
85 |
aaatcagtcccagctccattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcg |
184 |
Q |
| |
|
|||||||| || ||||| ||| | || || ||||||||||||||||||||||| ||| || ||||| || |||||| |||| ||||| | || || | |
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| T |
38752261 |
aaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatcttggagtgatgatgaaactacatttg |
38752162 |
T |
|
| Q |
185 |
ttgtttggcgtcctcctgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagctt |
257 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| || || || || | ||||| || ||||||||||| ||||| |
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| T |
38752161 |
ttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
38752089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 2910866 - 2910949
Alignment:
| Q |
200 |
ctgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaa |
283 |
Q |
| |
|
|||||||||||||||| | || || || || ||||||||||| || ||||| || |||||||| |||||||| |||||||||| |
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| T |
2910866 |
ctgaatttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa |
2910949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 45704786 - 45704831
Alignment:
| Q |
238 |
cacaacaacttctctagcttcgttcgacaactcaacacctatgtaa |
283 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || ||||||| |
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| T |
45704786 |
cacaacaatttctctagcttcgttcgccaactcaatacttatgtaa |
45704831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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