View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_26 (Length: 296)
Name: NF16748_low_26
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 692229 - 691961
Alignment:
| Q |
19 |
gattgatactgagtcctt-acatacatgtataaatgcaatagtacagaaaagaagtggatctgataatagtgcatgtgcgtagcttgaaaggaaagttca |
117 |
Q |
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| T |
692229 |
gattgatactgagtcctttacatacatgtataaatgcaatagtacagaaaagaactggatctgataatagtgcatgtgcgtagcttgaaaggaaagttca |
692130 |
T |
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| Q |
118 |
actcttctacttcaagtaataggataacataaggcgttgtattctatctagttaattgaataaatgtgcatttattgtttaatcaaagggaagattcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
692129 |
actcttctacttcaagtaataggataacataaggcgttgtat----tctagttaattgaataaatgtgcatttattgtttaatcaaagggaagattcttg |
692034 |
T |
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| Q |
218 |
tatgcttcctttacgggtcggtagtttgcttctttgaattttttctgagtttgaatacacattacctatgcta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
692033 |
tatgcttcctttacgggtcggtagtttgcttctttgaattttttctgagtttcaatacacattacctatgcta |
691961 |
T |
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