View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_28 (Length: 273)
Name: NF16748_low_28
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_28 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 40289 - 40042
Alignment:
| Q |
17 |
caaacatatgcagacagagctaagccaaagttagttaacatatatgcagaagtgtttccctctatatatannnnnnnnnnnnaaaccaaaattttcttgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |
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| T |
40289 |
caaacatatgcagacagagctaagccaaagttagttaacatatatgcacaagtgtttccctctatatatatgtgtgtgtgtgaaaccaaaattttcatgt |
40190 |
T |
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| Q |
117 |
tctttacactttgtaaacagttaaatgatctgtttcttagggaccaaggaaccatatgatcagccctaaaagccagaataacttaatgtgattatgtctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
40189 |
tctttacactttgtaaacagttaaatgatctgtttcttagggaccaaggaaccatatgatcagccctaaaagccagaagaacttaatgtgattctgtctc |
40090 |
T |
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| Q |
217 |
taaccacaaattgttccaattcttctcaactgaaatctcaatagcctt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40089 |
taaccacaaattgttccaattcttctcaactgaaatctcaatagcctt |
40042 |
T |
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