View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_30 (Length: 271)
Name: NF16748_low_30
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_30 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 44 - 271
Target Start/End: Complemental strand, 17082853 - 17082626
Alignment:
| Q |
44 |
ttggaactcatcatgttaaaacattagttttattagtcaactgtttcatagaattcccctaaatgatgtctttaattaattccatgaattttaaaattca |
143 |
Q |
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| T |
17082853 |
ttggaactcatcatgataaaacattagttttatcagtcagctgtttcatagaattcccctaaatgatgtctttaattaattccatgaattttaaaattca |
17082754 |
T |
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| Q |
144 |
tgaaagtgaaaaggactagaagaaatattagagaaagtaccttttgttagattcgatgattttaatcactttaccactatgtgacactacactaaatata |
243 |
Q |
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| T |
17082753 |
tgaaagtgaaaaggactagaagaaatattagagaaagtaccttttgttagattcgatgattttaatcactttaccactatgtgacactacactaaatata |
17082654 |
T |
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| Q |
244 |
taaatctcaagattaaacttcttgccaa |
271 |
Q |
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| T |
17082653 |
taaatctcaagattaaacttcttgccaa |
17082626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 17097640 - 17097502
Alignment:
| Q |
128 |
tgaattttaaaattcatgaaagtgaaaaggactagaagaaatattagagaaagtaccttttgttagattcgatgattttaatcactttaccactatgtga |
227 |
Q |
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| T |
17097640 |
tgaattttaaaattcgtaaaagtgaaaacgactagaagaaaaattagagaaagtaccttttgttagattcgatgattttaattactttaccattatgtga |
17097541 |
T |
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| Q |
228 |
cactacactaaatatataaatctcaagattaaacttcttgccaa |
271 |
Q |
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| T |
17097540 |
c-----actaaatatatatctcccaagattaaacttcttgccaa |
17097502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 17080026 - 17079938
Alignment:
| Q |
130 |
aattttaaaattcatgaaagtgaaaaggactagaagaaatattagagaaagtaccttttgttaga-ttcgatgattttaatcactttac |
217 |
Q |
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| T |
17080026 |
aattttaaaaatcatgacagtgaaaaggactagaagaaatattagaggagataccttttgttagattttgatgattttaatcactttac |
17079938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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