View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16748_low_38 (Length: 250)

Name: NF16748_low_38
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16748_low_38
NF16748_low_38
[»] chr5 (15 HSPs)
chr5 (1-250)||(17097227-17097476)
chr5 (9-250)||(17082359-17082600)
chr5 (28-151)||(17079584-17079716)
chr5 (27-69)||(17017853-17017895)
chr5 (26-69)||(16994617-16994660)
chr5 (159-194)||(17079744-17079779)
chr5 (41-80)||(17042524-17042563)
chr5 (101-144)||(17063009-17063052)
chr5 (159-217)||(17068271-17068330)
chr5 (41-79)||(17002654-17002692)
chr5 (41-79)||(17031984-17032022)
chr5 (41-79)||(17036698-17036736)
chr5 (28-69)||(17062949-17062990)
chr5 (159-217)||(17063085-17063145)
chr5 (28-69)||(17068101-17068142)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 17097227 - 17097476
Alignment:
Q  1 gatgtactcttgaatctgcatgtgcagtgttgattcaattccaagagttcccccaaacacttcattgaacaagaactattcatatagattgtctcatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17097227 gatgtactcttgaatctgcatgtgcagtgttgattcaattccaagagttcccccaaacacttcattgaacaagaactatccatatagattgtctcatgtt 17097326  T
Q  101 tgaagcattcagaggaactccaagagaaaatcaacaaataattactaagcttttatttttggttaaacaatgcatggcaagttctctatatatagtaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17097327 tgaagcattcagaggaactccaagagaaaatcaacaaataattactaagcttgtatttttggttaaacaatgcatggcaagttctctatatatagtaaag 17097426  T
Q  201 agattgtgttcaaaggagtgagagaattgaatctttgtgtggtcatgcaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17097427 agattgtgttcaaaggagtgagagaattgaatctttgtgtggtcatgcaa 17097476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 17082359 - 17082600
Alignment:
Q  9 cttgaatctgcatgtgcagtgttgattcaattccaagagttcccccaaacacttcattgaacaagaactattcatatagattgtctcatgtttgaagcat 108  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17082359 cttgaatcttgatgtgcagtgttgattcaattccaagagttcccccaaacacttcattgaacaagaactattcatatagattgtctcatgattgaagcat 17082458  T
Q  109 tcagaggaactccaagagaaaatcaacaaataattactaagcttttatttttggttaaacaatgcatggcaagttctctatatatagtaaagagattgtg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17082459 tcagaggaactccaagagaaaatcaacaaataattactaagcttgtatttttggttaaacaatgcatggcaagttctctatatatagtaaagagattgtg 17082558  T
Q  209 ttcaaaggagtgagagaattgaatctttgtgtggtcatgcaa 250  Q
    |||||||||   ||||| ||||||||||||||||||||||||    
T  17082559 ttcaaaggacaaagagacttgaatctttgtgtggtcatgcaa 17082600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 17079584 - 17079716
Alignment:
Q  28 tgttgattcaattccaagagttcccccaaacacttcattgaacaagaactattcatat---------agattgtctcatgtttgaagcattcagaggaac 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||          |||||||||||||||||||||||||||||||||    
T  17079584 tgttgattcaattccaagagttcccccaaatacttcattgaacaagaactatccataatttctatcaagattgtctcatgtttgaagcattcagaggaac 17079683  T
Q  119 tccaagagaaaatcaacaaataattactaagct 151  Q
    ||||||||||||||||||| |||||||| ||||    
T  17079684 tccaagagaaaatcaacaagtaattactcagct 17079716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 17017853 - 17017895
Alignment:
Q  27 gtgttgattcaattccaagagttcccccaaacacttcattgaa 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17017853 gtgttgattcaactccaagagttcccccaaacacttcattgaa 17017895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 16994617 - 16994660
Alignment:
Q  26 agtgttgattcaattccaagagttcccccaaacacttcattgaa 69  Q
    |||| |||||||| ||||||||||||||||||||||||||||||    
T  16994617 agtgctgattcaactccaagagttcccccaaacacttcattgaa 16994660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 17079744 - 17079779
Alignment:
Q  159 ttggttaaacaatgcatggcaagttctctatatata 194  Q
    ||||||||||||||||||||||||||||||||||||    
T  17079744 ttggttaaacaatgcatggcaagttctctatatata 17079779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 17042524 - 17042563
Alignment:
Q  41 ccaagagttcccccaaacacttcattgaacaagaactatt 80  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  17042524 ccaagagttcccccaaacacttcatttaagaagaactatt 17042563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 17063009 - 17063052
Alignment:
Q  101 tgaagcattcagaggaactccaagagaaaatcaacaaataatta 144  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  17063009 tgaagcgttcagaggaactccaagaaacaatcaacaaataatta 17063052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17068271 - 17068330
Alignment:
Q  159 ttggttaaacaa-tgcatggcaagttctctatatatagtaaagagattgtgttcaaagga 217  Q
    |||||||||||| | |||| ||||| |||||||||||||| || ||||||||||||||||    
T  17068271 ttggttaaacaaatccatgccaagtgctctatatatagtagagggattgtgttcaaagga 17068330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 17002654 - 17002692
Alignment:
Q  41 ccaagagttcccccaaacacttcattgaacaagaactat 79  Q
    |||||||||||||||||||||||||| || |||||||||    
T  17002654 ccaagagttcccccaaacacttcatttaagaagaactat 17002692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 17031984 - 17032022
Alignment:
Q  41 ccaagagttcccccaaacacttcattgaacaagaactat 79  Q
    |||||||||||||||||||||||||| || |||||||||    
T  17031984 ccaagagttcccccaaacacttcatttaagaagaactat 17032022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 17036698 - 17036736
Alignment:
Q  41 ccaagagttcccccaaacacttcattgaacaagaactat 79  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  17036698 ccaagagttcccccaaacacttcattgatgaagaactat 17036736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 17062949 - 17062990
Alignment:
Q  28 tgttgattcaattccaagagttcccccaaacacttcattgaa 69  Q
    ||||| || |||||||||||||||||||||||||||| ||||    
T  17062949 tgttggtttaattccaagagttcccccaaacacttcaatgaa 17062990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17063085 - 17063145
Alignment:
Q  159 ttggttaaacaat--gcatggcaagttctctatatatagtaaagagattgtgttcaaagga 217  Q
    |||||||||||||  ||||| ||| | |||||||||||||| ||||||||||||| |||||    
T  17063085 ttggttaaacaatatgcatgccaattgctctatatatagtagagagattgtgttcgaagga 17063145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 17068101 - 17068142
Alignment:
Q  28 tgttgattcaattccaagagttcccccaaacacttcattgaa 69  Q
    ||||| || |||||||| ||||||||||||||||||||||||    
T  17068101 tgttggttgaattccaaaagttcccccaaacacttcattgaa 17068142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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