View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16748_low_4 (Length: 555)
Name: NF16748_low_4
Description: NF16748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16748_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 134 - 538
Target Start/End: Complemental strand, 5010267 - 5009868
Alignment:
| Q |
134 |
catccaccacaacgacaatcattgaatcgagatcggatgatgaatatttgaaggttggattttgatttaaaaaagacaaaaacatatggttgaaatctgc |
233 |
Q |
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| T |
5010267 |
catccaccacaacgacaattattgcatcgagatcggaagatgaatatttgaaggttggattttgatttaaaaaagacaaaaacatatggttgaaatctgc |
5010168 |
T |
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| Q |
234 |
actgtctgtccgtgcagatccaacggtcaccgatgtctgaatgcttgactatggtcactacagacaatccgattttgaaaataaaatagtcgttctaggt |
333 |
Q |
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| T |
5010167 |
actgtctgtccgtgcagatccaacggtcaccgatgtgtgaatgcttgactatggtcactacagacaatccgattttgaaaataaaatagtcgttctaggt |
5010068 |
T |
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| Q |
334 |
tatgtaactattggttttgatgagagaaaaacatgcaatattcaacgagtcaagggagaaaccaaatattaccacgccataagaataacgagtggnnnnn |
433 |
Q |
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| T |
5010067 |
tatgtaactattggttttgatgagagaaaaacatgcaatattcaacgagtcaagggagaaaccaaatattaccacgccataagaataacgagtggaaaaa |
5009968 |
T |
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| Q |
434 |
nnnnnnnnggctttacaattacaagagattgaatcaataagaaagatcaagcaaataaat-aaaatattgatagaaataacaaaagacaagaaatgagta |
532 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5009967 |
atgaaaaaggct------ttacgagagattgaatcaataagaaagatcaagcaaataaataaaaatattgatagaaataacaaaagacaagaaatgagta |
5009874 |
T |
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